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Protein

DNA ligase

Gene

PTT_11577

Organism
Pyrenophora teres f. teres (strain 0-1) (Barley net blotch fungus) (Drechslera teres f. teres)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA biosynthetic process Source: InterPro
  2. DNA ligation involved in DNA repair Source: InterPro
  3. DNA recombination Source: UniProtKB-KW
  4. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotation

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:PTT_11577Imported
OrganismiPyrenophora teres f. teres (strain 0-1) (Barley net blotch fungus) (Drechslera teres f. teres)Imported
Taxonomic identifieri861557 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaDothideomycetesPleosporomycetidaePleosporalesPleosporineaePleosporaceaePyrenophora
ProteomesiUP000001067 Componenti: Unassembled WGS sequence

Subcellular locationi

GO - Cellular componenti

  1. nucleus Source: EnsemblFungi
Complete GO annotation...

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

OrthoDBiEOG7TXKRG.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E3RRT9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNSPSKRRKK NDGSGKPVRS LDYFFAKQTA KATPKDAPTN TGASAEEDTT
60 70 80 90 100
GLTDEQLARK LQEQFDKEDQ QRGQDAEPAS SNELYTDPGK SMTDVTAKND
110 120 130 140 150
VDNVEPSNVP LPNRTIQEAP ESAPPKQKNT LSLQSTASEE DTITANIPFD
160 170 180 190 200
QSPLEFDPQD YIPDLQKHWV ADGGHATYAL LTRCFILVNS TTSRIKIVDT
210 220 230 240 250
LVNLLRTIIE SDPSSLLPAV WLATNAISPP YIDLELGLGG SAISKALKKV
260 270 280 290 300
CGLDNAGLKV LNNKYGDAGD VAFEAKKKQS FTLRKPKPLT IKSVFESLVK
310 320 330 340 350
IANSKGHGSV ENKQRIVERL VQDARGAEES RYIVRTLVQH LRIGAVKTTM
360 370 380 390 400
LIALSRAFML SKPLGAEFEI RDRKDMAKLK KEELTEIYSR NEEIVKACFA
410 420 430 440 450
RRPNYNDLIP VLLEIGVCEE LLVRCGLTLH IPLRPMLGSI TRDMGEMLTK
460 470 480 490 500
LQGRDFACEY KYDGQRAQVH CDDKGKVTIF SRHLEVMTDK YPDLVALVPK
510 520 530 540 550
IRGEGVSSFI LEGEVVAVDR ESGDLKTFQT LANRARKDVV IGAVTIDVCL
560 570 580 590 600
FAFDLMYLNG EELLNRPFRE RRSLLKSLFV EIPHHFTWVK SLDATSADVE
610 620 630 640 650
AVQSFFQSAL DIKCEGIMVK MLDNNPPIPD LVPDPDQPTT PKKPKKKAAK
660 670 680 690 700
SSKSSAVKDD SSTTTTKPSR RKPLLSTYEP DKRLDAWLKV KKDYSTTSET
710 720 730 740 750
LDLIPIAAFH GSGRKAAWWS PILLAVRNAE TGQLDAVTKC MSGFTDAFYR
760 770 780 790 800
ANRKKYDPDD PECTVVLGQK PSFVRYNGGA GTPAVWFEPH EVWEVAFADL
810 820 830 840 850
TLSPTYTAAI GLVSEERGLS TRFPRFLRVR EDKGVDEATE AGELAALYRK
860 870
QEAKATLTKD EGEQQDIVEE EED
Length:873
Mass (Da):97,054
Last modified:January 11, 2011 - v1
Checksum:iB005CFD75A9D5A0C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL534730 Genomic DNA. Translation: EFQ91558.1.
RefSeqiXP_003300344.1. XM_003300296.1.

Genome annotation databases

EnsemblFungiiEFQ91558; EFQ91558; PTT_11577.
GeneIDi10518810.
KEGGipte:PTT_11577.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL534730 Genomic DNA. Translation: EFQ91558.1.
RefSeqiXP_003300344.1. XM_003300296.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiEFQ91558; EFQ91558; PTT_11577.
GeneIDi10518810.
KEGGipte:PTT_11577.

Phylogenomic databases

OrthoDBiEOG7TXKRG.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "A first genome assembly of the barley fungal pathogen Pyrenophora teres f. teres."
    Ellwood S.R., Liu Z., Syme R.A., Lai Z., Hane J.K., Keiper F., Moffat C.S., Oliver R.P., Friesen T.L.
    Genome Biol. 11:R109.1-R109.14(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 0-1Imported.

Entry informationi

Entry nameiE3RRT9_PYRTT
AccessioniPrimary (citable) accession number: E3RRT9
Entry historyi
Integrated into UniProtKB/TrEMBL: January 11, 2011
Last sequence update: January 11, 2011
Last modified: April 1, 2015
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.