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Protein
Submitted name:

DNA polymerase LigD, ligase domain protein

Gene

FraEuI1c_4744

Organism
Frankia sp. (strain EuI1c)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciFSP298654:GHN6-4780-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, ligase domain proteinImported
Gene namesi
Ordered Locus Names:FraEuI1c_4744Imported
OrganismiFrankia sp. (strain EuI1c)Imported
Taxonomic identifieri298654 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaFrankialesFrankiaceaeFrankia
ProteomesiUP000002484 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi298654.FraEuI1c_4744.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiKWSDREV.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E3IZG5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSGDAPRGLD AYRGKRDAAR TPEPVPEADP ARHPRPDPAA PSDPAASGPA
60 70 80 90 100
AAVDSQEAGP VDHTGDDQAG RGDTFVIQEH HARALHWDFR LERDGVLVSW
110 120 130 140 150
AVPRGLPVDR TANHLARQTE DHPLEYAEFA GEIPKGEYGG GTVTIWDRGG
160 170 180 190 200
YELESWTADK IKVTLHGSRV QGRYVLFRAG GGRTTARQTT ARQTTARQTT
210 220 230 240 250
ARQTGARAYG PDDWMVRRLD PPDDPTREPM PTTLAPMRAV ASRELPAGPD
260 270 280 290 300
WAYEVKWDGM RVLAFVDGGR VRARSRTGRD VTAAFPELRA VGLALGSTQA
310 320 330 340 350
VLDGEIVAFG PDGTPDFGRL AHRMHVADAA AARRLAGRIP VSYLVFDLLF
360 370 380 390 400
LDGHPTTARS YDERRALLAR LPGLTLSETL AGDGPDVLRA SAEAGLEGVI
410 420 430 440 450
AKRRSAAYLP GRRGSDWVKV KNTRTQSVVI GGWEPGAGKR ADRVGSLLVG
460 470 480 490 500
VAERPGLGEA PPGAPRFRYA GHVGTGFSDA TLDLLGRLLA PLRRDEPPFA
510 520 530 540 550
DVPDAHVRAA VWVRPELVAE VAYAHWTADN RLRHPSFKGL RDDLAPAETV

VDGDTEPT
Length:558
Mass (Da):60,189
Last modified:January 11, 2011 - v1
Checksum:i34BA1FC42FB400F1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002299 Genomic DNA. Translation: ADP82735.1.
RefSeqiWP_013425853.1. NC_014666.1.

Genome annotation databases

EnsemblBacteriaiADP82735; ADP82735; FraEuI1c_4744.
KEGGifri:FraEuI1c_4744.
PATRICi42621695. VBIFraSp2231_4880.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002299 Genomic DNA. Translation: ADP82735.1.
RefSeqiWP_013425853.1. NC_014666.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi298654.FraEuI1c_4744.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADP82735; ADP82735; FraEuI1c_4744.
KEGGifri:FraEuI1c_4744.
PATRICi42621695. VBIFraSp2231_4880.

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiKWSDREV.

Enzyme and pathway databases

BioCyciFSP298654:GHN6-4780-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: EuI1cImported.

Entry informationi

Entry nameiE3IZG5_FRASU
AccessioniPrimary (citable) accession number: E3IZG5
Entry historyi
Integrated into UniProtKB/TrEMBL: January 11, 2011
Last sequence update: January 11, 2011
Last modified: July 22, 2015
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.