E3IZG5 (E3IZG5_FRASU) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA polymerase LigD, ligase domain protein EMBL ADP82735.1

Gene names

Ordered Locus Names:

FraEuI1c_4744 EMBL ADP82735.1

Organism

Frankia sp. (strain EuI1c) [Complete proteome] [HAMAP]

Taxonomic identifier

298654 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Frankineae › Frankiaceae › Frankia

Protein attributes

Sequence length	558 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ADP82735.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	E3IZG5 [UniParc]. Last modified January 11, 2011. Version 1. Checksum: 34BA1FC42FB400F1	FASTA	558	60,189
	10 20 30 40 50 60 MSGDAPRGLD AYRGKRDAAR TPEPVPEADP ARHPRPDPAA PSDPAASGPA AAVDSQEAGP 70 80 90 100 110 120 VDHTGDDQAG RGDTFVIQEH HARALHWDFR LERDGVLVSW AVPRGLPVDR TANHLARQTE 130 140 150 160 170 180 DHPLEYAEFA GEIPKGEYGG GTVTIWDRGG YELESWTADK IKVTLHGSRV QGRYVLFRAG 190 200 210 220 230 240 GGRTTARQTT ARQTTARQTT ARQTGARAYG PDDWMVRRLD PPDDPTREPM PTTLAPMRAV 250 260 270 280 290 300 ASRELPAGPD WAYEVKWDGM RVLAFVDGGR VRARSRTGRD VTAAFPELRA VGLALGSTQA 310 320 330 340 350 360 VLDGEIVAFG PDGTPDFGRL AHRMHVADAA AARRLAGRIP VSYLVFDLLF LDGHPTTARS 370 380 390 400 410 420 YDERRALLAR LPGLTLSETL AGDGPDVLRA SAEAGLEGVI AKRRSAAYLP GRRGSDWVKV 430 440 450 460 470 480 KNTRTQSVVI GGWEPGAGKR ADRVGSLLVG VAERPGLGEA PPGAPRFRYA GHVGTGFSDA 490 500 510 520 530 540 TLDLLGRLLA PLRRDEPPFA DVPDAHVRAA VWVRPELVAE VAYAHWTADN RLRHPSFKGL 550 RDDLAPAETV VDGDTEPT

References

[1]

"Complete sequence of Frankia sp. EuI1c." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Chertkov O., Detter J.C., Han C., Tapia R., Land M., Hauser L., Jeffries C., Kyrpides N., Ivanova N., Mikhailova N., Beauchemin N. , Sen A., Sur S.A., Gtari M., Wall L., Tisa L., Woyke T. Submitted (OCT-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: EuI1c EMBL ADP82735.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002299 Genomic DNA. Translation: ADP82735.1.
RefSeq	YP_004018605.1. NC_014666.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADP82735; ADP82735; FraEuI1c_4744.
GeneID	9975186.
KEGG	fri:FraEuI1c_4744.
PATRIC	42621695. VBIFraSp2231_4880.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000222509.
KO	K01971.
Enzyme and pathway databases
BioCyc	FSP298654:GHN6-4780-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR014146. DNA_pol_LigD_ligase_dom. IPR014144. LigD_PE_domain. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

E3IZG5_FRASU

Accession

Primary (citable) accession number: E3IZG5

Entry history

Integrated into UniProtKB/TrEMBL:	January 11, 2011
Last sequence update:	January 11, 2011
Last modified:	May 1, 2013
This is version 14 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)