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E3IZG5

- E3IZG5_FRASU

UniProt

E3IZG5 - E3IZG5_FRASU

Protein
Submitted name:

DNA polymerase LigD, ligase domain protein

Gene

FraEuI1c_4744

Organism
Frankia sp. (strain EuI1c)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 17 (01 Oct 2014)
      Sequence version 1 (11 Jan 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciFSP298654:GHN6-4780-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA polymerase LigD, ligase domain proteinImported
    Gene namesi
    Ordered Locus Names:FraEuI1c_4744Imported
    OrganismiFrankia sp. (strain EuI1c)Imported
    Taxonomic identifieri298654 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesFrankineaeFrankiaceaeFrankia
    ProteomesiUP000002484: Chromosome

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiMVHRMDP.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    E3IZG5-1 [UniParc]FASTAAdd to Basket

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    MSGDAPRGLD AYRGKRDAAR TPEPVPEADP ARHPRPDPAA PSDPAASGPA    50
    AAVDSQEAGP VDHTGDDQAG RGDTFVIQEH HARALHWDFR LERDGVLVSW 100
    AVPRGLPVDR TANHLARQTE DHPLEYAEFA GEIPKGEYGG GTVTIWDRGG 150
    YELESWTADK IKVTLHGSRV QGRYVLFRAG GGRTTARQTT ARQTTARQTT 200
    ARQTGARAYG PDDWMVRRLD PPDDPTREPM PTTLAPMRAV ASRELPAGPD 250
    WAYEVKWDGM RVLAFVDGGR VRARSRTGRD VTAAFPELRA VGLALGSTQA 300
    VLDGEIVAFG PDGTPDFGRL AHRMHVADAA AARRLAGRIP VSYLVFDLLF 350
    LDGHPTTARS YDERRALLAR LPGLTLSETL AGDGPDVLRA SAEAGLEGVI 400
    AKRRSAAYLP GRRGSDWVKV KNTRTQSVVI GGWEPGAGKR ADRVGSLLVG 450
    VAERPGLGEA PPGAPRFRYA GHVGTGFSDA TLDLLGRLLA PLRRDEPPFA 500
    DVPDAHVRAA VWVRPELVAE VAYAHWTADN RLRHPSFKGL RDDLAPAETV 550
    VDGDTEPT 558
    Length:558
    Mass (Da):60,189
    Last modified:January 11, 2011 - v1
    Checksum:i34BA1FC42FB400F1
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002299 Genomic DNA. Translation: ADP82735.1.
    RefSeqiWP_013425853.1. NC_014666.1.
    YP_004018605.1. NC_014666.1.

    Genome annotation databases

    EnsemblBacteriaiADP82735; ADP82735; FraEuI1c_4744.
    GeneIDi9975186.
    KEGGifri:FraEuI1c_4744.
    PATRICi42621695. VBIFraSp2231_4880.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002299 Genomic DNA. Translation: ADP82735.1 .
    RefSeqi WP_013425853.1. NC_014666.1.
    YP_004018605.1. NC_014666.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADP82735 ; ADP82735 ; FraEuI1c_4744 .
    GeneIDi 9975186.
    KEGGi fri:FraEuI1c_4744.
    PATRICi 42621695. VBIFraSp2231_4880.

    Phylogenomic databases

    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi MVHRMDP.

    Enzyme and pathway databases

    BioCyci FSP298654:GHN6-4780-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: EuI1cImported.

    Entry informationi

    Entry nameiE3IZG5_FRASU
    AccessioniPrimary (citable) accession number: E3IZG5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: January 11, 2011
    Last sequence update: January 11, 2011
    Last modified: October 1, 2014
    This is version 17 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3