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E3IZG5

- E3IZG5_FRASU

UniProt

E3IZG5 - E3IZG5_FRASU

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Protein
Submitted name:

DNA polymerase LigD, ligase domain protein

Gene
FraEuI1c_4744
Organism
Frankia sp. (strain EuI1c)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciFSP298654:GHN6-4780-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, ligase domain proteinImported
Gene namesi
Ordered Locus Names:FraEuI1c_4744Imported
OrganismiFrankia sp. (strain EuI1c)Imported
Taxonomic identifieri298654 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesFrankineaeFrankiaceaeFrankia
ProteomesiUP000002484: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiMVHRMDP.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E3IZG5-1 [UniParc]FASTAAdd to Basket

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MSGDAPRGLD AYRGKRDAAR TPEPVPEADP ARHPRPDPAA PSDPAASGPA    50
AAVDSQEAGP VDHTGDDQAG RGDTFVIQEH HARALHWDFR LERDGVLVSW 100
AVPRGLPVDR TANHLARQTE DHPLEYAEFA GEIPKGEYGG GTVTIWDRGG 150
YELESWTADK IKVTLHGSRV QGRYVLFRAG GGRTTARQTT ARQTTARQTT 200
ARQTGARAYG PDDWMVRRLD PPDDPTREPM PTTLAPMRAV ASRELPAGPD 250
WAYEVKWDGM RVLAFVDGGR VRARSRTGRD VTAAFPELRA VGLALGSTQA 300
VLDGEIVAFG PDGTPDFGRL AHRMHVADAA AARRLAGRIP VSYLVFDLLF 350
LDGHPTTARS YDERRALLAR LPGLTLSETL AGDGPDVLRA SAEAGLEGVI 400
AKRRSAAYLP GRRGSDWVKV KNTRTQSVVI GGWEPGAGKR ADRVGSLLVG 450
VAERPGLGEA PPGAPRFRYA GHVGTGFSDA TLDLLGRLLA PLRRDEPPFA 500
DVPDAHVRAA VWVRPELVAE VAYAHWTADN RLRHPSFKGL RDDLAPAETV 550
VDGDTEPT 558
Length:558
Mass (Da):60,189
Last modified:January 11, 2011 - v1
Checksum:i34BA1FC42FB400F1
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002299 Genomic DNA. Translation: ADP82735.1.
RefSeqiWP_013425853.1. NC_014666.1.
YP_004018605.1. NC_014666.1.

Genome annotation databases

EnsemblBacteriaiADP82735; ADP82735; FraEuI1c_4744.
GeneIDi9975186.
KEGGifri:FraEuI1c_4744.
PATRICi42621695. VBIFraSp2231_4880.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002299 Genomic DNA. Translation: ADP82735.1 .
RefSeqi WP_013425853.1. NC_014666.1.
YP_004018605.1. NC_014666.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADP82735 ; ADP82735 ; FraEuI1c_4744 .
GeneIDi 9975186.
KEGGi fri:FraEuI1c_4744.
PATRICi 42621695. VBIFraSp2231_4880.

Phylogenomic databases

HOGENOMi HOG000222509.
KOi K01971.
OMAi MVHRMDP.

Enzyme and pathway databases

BioCyci FSP298654:GHN6-4780-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: EuI1cImported.

Entry informationi

Entry nameiE3IZG5_FRASU
AccessioniPrimary (citable) accession number: E3IZG5
Entry historyi
Integrated into UniProtKB/TrEMBL: January 11, 2011
Last sequence update: January 11, 2011
Last modified: September 3, 2014
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3