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E3IZ56 (E3IZ56_FRASU) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:FraEuI1c_2300 EMBL ADP80339.1
OrganismFrankia sp. (strain EuI1c) [Complete proteome] [HAMAP] EMBL ADP80339.1
Taxonomic identifier298654 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesFrankineaeFrankiaceaeFrankia

Protein attributes

Sequence length360 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
E3IZ56 [UniParc].

Last modified January 11, 2011. Version 1.
Checksum: 5098355B0AD40B1B

FASTA36040,185
        10         20         30         40         50         60 
MQLPVMPPVA PMLAKSVPTI PSGASYEPKW DGFRCICFRD GDEVELGSRN EKPMTRYFPE 

        70         80         90        100        110        120 
LVEAIKAELP DRCVLDGEIV IALDGRLDFE ALQQRIHPAV SRVKLLSGTT PASFIAFDLL 

       130        140        150        160        170        180 
ALGDEDYTGR PFAERRAALE AALAPAKAPI HLTTTTTDLD VANRWFVELE GAHLDGVIAK 

       190        200        210        220        230        240 
PLDGVYQPDK RVMFKIKHVR TADCVLAGFR WHKTSTEAAP LVGSLLLGLY NDEHKLQHVG 

       250        260        270        280        290        300 
VVGAFTAKRR AELVDELAPL LLGDGDDHPW QEWASAEAHQ GQRLPGNVNR WNAQKDLSFI 

       310        320        330        340        350        360 
PLRPERVLEV KYEHMEGTRF RHLAHFVRWR ADRTPASCTY EQLEQPLTYT LSDIVPGLGS 

« Hide

References

[1]"Complete sequence of Frankia sp. EuI1c."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Chertkov O., Detter J.C., Han C., Tapia R., Land M., Hauser L., Jeffries C., Kyrpides N., Ivanova N., Mikhailova N., Beauchemin N. expand/collapse author list , Sen A., Sur S.A., Gtari M., Wall L., Tisa L., Woyke T.
Submitted (OCT-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: EuI1c EMBL ADP80339.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002299 Genomic DNA. Translation: ADP80339.1.
RefSeqYP_004016209.1. NC_014666.1.

3D structure databases

ProteinModelPortalE3IZ56.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADP80339; ADP80339; FraEuI1c_2300.
GeneID9972732.
KEGGfri:FraEuI1c_2300.
PATRIC42616644. VBIFraSp2231_2363.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000222508.
KOK01971.
OMAHERTADC.

Enzyme and pathway databases

BioCycFSP298654:GHN6-2326-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE3IZ56_FRASU
AccessionPrimary (citable) accession number: E3IZ56
Entry history
Integrated into UniProtKB/TrEMBL: January 11, 2011
Last sequence update: January 11, 2011
Last modified: May 14, 2014
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)