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E3IZ56

- E3IZ56_FRASU

UniProt

E3IZ56 - E3IZ56_FRASU

Protein
Submitted name:

ATP dependent DNA ligase

Gene

FraEuI1c_2300

Organism
Frankia sp. (strain EuI1c)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 18 (01 Oct 2014)
      Sequence version 1 (11 Jan 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciFSP298654:GHN6-2326-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:FraEuI1c_2300Imported
    OrganismiFrankia sp. (strain EuI1c)Imported
    Taxonomic identifieri298654 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesFrankineaeFrankiaceaeFrankia
    ProteomesiUP000002484: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliE3IZ56.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000222508.
    KOiK01971.
    OMAiHERTADC.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    E3IZ56-1 [UniParc]FASTAAdd to Basket

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    MQLPVMPPVA PMLAKSVPTI PSGASYEPKW DGFRCICFRD GDEVELGSRN    50
    EKPMTRYFPE LVEAIKAELP DRCVLDGEIV IALDGRLDFE ALQQRIHPAV 100
    SRVKLLSGTT PASFIAFDLL ALGDEDYTGR PFAERRAALE AALAPAKAPI 150
    HLTTTTTDLD VANRWFVELE GAHLDGVIAK PLDGVYQPDK RVMFKIKHVR 200
    TADCVLAGFR WHKTSTEAAP LVGSLLLGLY NDEHKLQHVG VVGAFTAKRR 250
    AELVDELAPL LLGDGDDHPW QEWASAEAHQ GQRLPGNVNR WNAQKDLSFI 300
    PLRPERVLEV KYEHMEGTRF RHLAHFVRWR ADRTPASCTY EQLEQPLTYT 350
    LSDIVPGLGS 360
    Length:360
    Mass (Da):40,185
    Last modified:January 11, 2011 - v1
    Checksum:i5098355B0AD40B1B
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002299 Genomic DNA. Translation: ADP80339.1.
    RefSeqiWP_013423458.1. NC_014666.1.
    YP_004016209.1. NC_014666.1.

    Genome annotation databases

    EnsemblBacteriaiADP80339; ADP80339; FraEuI1c_2300.
    GeneIDi9972732.
    KEGGifri:FraEuI1c_2300.
    PATRICi42616644. VBIFraSp2231_2363.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002299 Genomic DNA. Translation: ADP80339.1 .
    RefSeqi WP_013423458.1. NC_014666.1.
    YP_004016209.1. NC_014666.1.

    3D structure databases

    ProteinModelPortali E3IZ56.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADP80339 ; ADP80339 ; FraEuI1c_2300 .
    GeneIDi 9972732.
    KEGGi fri:FraEuI1c_2300.
    PATRICi 42616644. VBIFraSp2231_2363.

    Phylogenomic databases

    HOGENOMi HOG000222508.
    KOi K01971.
    OMAi HERTADC.

    Enzyme and pathway databases

    BioCyci FSP298654:GHN6-2326-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: EuI1cImported.

    Entry informationi

    Entry nameiE3IZ56_FRASU
    AccessioniPrimary (citable) accession number: E3IZ56
    Entry historyi
    Integrated into UniProtKB/TrEMBL: January 11, 2011
    Last sequence update: January 11, 2011
    Last modified: October 1, 2014
    This is version 18 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3