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Protein
Submitted name:

ATP dependent DNA ligase

Gene

FraEuI1c_2300

Organism
Frankia sp. (strain EuI1c)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciFSP298654:GHN6-2326-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:FraEuI1c_2300Imported
OrganismiFrankia sp. (strain EuI1c)Imported
Taxonomic identifieri298654 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesFrankineaeFrankiaceaeFrankia
ProteomesiUP000002484: Chromosome

Structurei

3D structure databases

ProteinModelPortaliE3IZ56.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222508.
KOiK01971.
OMAiHERTADC.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E3IZ56-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MQLPVMPPVA PMLAKSVPTI PSGASYEPKW DGFRCICFRD GDEVELGSRN
60 70 80 90 100
EKPMTRYFPE LVEAIKAELP DRCVLDGEIV IALDGRLDFE ALQQRIHPAV
110 120 130 140 150
SRVKLLSGTT PASFIAFDLL ALGDEDYTGR PFAERRAALE AALAPAKAPI
160 170 180 190 200
HLTTTTTDLD VANRWFVELE GAHLDGVIAK PLDGVYQPDK RVMFKIKHVR
210 220 230 240 250
TADCVLAGFR WHKTSTEAAP LVGSLLLGLY NDEHKLQHVG VVGAFTAKRR
260 270 280 290 300
AELVDELAPL LLGDGDDHPW QEWASAEAHQ GQRLPGNVNR WNAQKDLSFI
310 320 330 340 350
PLRPERVLEV KYEHMEGTRF RHLAHFVRWR ADRTPASCTY EQLEQPLTYT
360
LSDIVPGLGS
Length:360
Mass (Da):40,185
Last modified:January 11, 2011 - v1
Checksum:i5098355B0AD40B1B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002299 Genomic DNA. Translation: ADP80339.1.
RefSeqiWP_013423458.1. NC_014666.1.
YP_004016209.1. NC_014666.1.

Genome annotation databases

EnsemblBacteriaiADP80339; ADP80339; FraEuI1c_2300.
GeneIDi9972732.
KEGGifri:FraEuI1c_2300.
PATRICi42616644. VBIFraSp2231_2363.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002299 Genomic DNA. Translation: ADP80339.1.
RefSeqiWP_013423458.1. NC_014666.1.
YP_004016209.1. NC_014666.1.

3D structure databases

ProteinModelPortaliE3IZ56.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADP80339; ADP80339; FraEuI1c_2300.
GeneIDi9972732.
KEGGifri:FraEuI1c_2300.
PATRICi42616644. VBIFraSp2231_2363.

Phylogenomic databases

HOGENOMiHOG000222508.
KOiK01971.
OMAiHERTADC.

Enzyme and pathway databases

BioCyciFSP298654:GHN6-2326-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: EuI1cImported.

Entry informationi

Entry nameiE3IZ56_FRASU
AccessioniPrimary (citable) accession number: E3IZ56
Entry historyi
Integrated into UniProtKB/TrEMBL: January 11, 2011
Last sequence update: January 11, 2011
Last modified: January 7, 2015
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.