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Protein
Submitted name:

RNA methyltransferase, TrmA family

Gene

GY4MC1_3351

Organism
Geobacillus sp. (strain Y4.1MC1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. RNA binding Source: InterPro
  2. RNA methyltransferase activity Source: InterPro

GO - Biological processi

  1. RNA processing Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

MethyltransferaseSAAS annotationImported, Transferase

Keywords - Ligandi

S-adenosyl-L-methionineSAAS annotation

Enzyme and pathway databases

BioCyciGSP581103:GHT2-3451-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
RNA methyltransferase, TrmA familyImported
Gene namesi
Ordered Locus Names:GY4MC1_3351Imported
OrganismiGeobacillus sp. (strain Y4.1MC1)Imported
Taxonomic identifieri581103 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeGeobacillus
ProteomesiUP000002034: Chromosome

Structurei

3D structure databases

ProteinModelPortaliE3IFL5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains TRAM domain.SAAS annotation

Phylogenomic databases

HOGENOMiHOG000029867.
KOiK00557.
OMAiGFELEHM.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
3.40.50.150. 1 hit.
InterProiIPR001566. 23S_rRNA_MeTrfase_RlmD.
IPR030390. MeTrfase_TrmA_AS.
IPR030391. MeTrfase_TrmA_CS.
IPR012340. NA-bd_OB-fold.
IPR029063. SAM-dependent_MTases.
IPR002792. TRAM_dom.
IPR010280. U5_MeTrfase_fam.
[Graphical view]
PfamiPF01938. TRAM. 1 hit.
PF05958. tRNA_U5-meth_tr. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
SSF53335. SSF53335. 1 hit.
TIGRFAMsiTIGR00479. rumA. 1 hit.
PROSITEiPS51687. SAM_MT_RNA_M5U. 1 hit.
PS50926. TRAM. 1 hit.
PS01230. TRMA_1. 1 hit.
PS01231. TRMA_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E3IFL5-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MTKKTITIKK GQQFPLTIKR LGINGEGVGY FKKQVVFVPG ALPGEEVVVE
60 70 80 90 100
ATDIHLKYAE AKIKKIRKRS PHRVMPRCPV YEQCGGCQLQ HLDYEAQLRE
110 120 130 140 150
KRDIVIQALE RHCRLPVETL EIRPTIGMED PWHYRNKSQF QVGMKKGEVI
160 170 180 190 200
AGLYGLNSHQ LIDISECLIQ HPATNRVTNM VKMILQDLRI PIYNERTQTG
210 220 230 240 250
LVRTIVARVG FRTGDVQLVL ITAKKEIPRK ELLIAEIKRR LPEVKSIVQN
260 270 280 290 300
INGQKTSLIF GEESLLLEGE EYIQEVLGDL SFELSARAFF QLNPVQTVKL
310 320 330 340 350
YDEVKKAAAL TGTEKVVDAY CGVGTIGLWL AKDAGEIRGM DVIPEAIEDA
360 370 380 390 400
KKNAKKHGFA NATYVSGKAE ALLPKWVKEG WKPDVIVVDP PRTGCDEQLL
410 420 430 440 450
KTILKVKPQR IVYVSCNPSS LARDIDVLSK FYKVDYIQPV DMFPHTAHVE

CVAKLTLKL
Length:459
Mass (Da):51,741
Last modified:January 11, 2011 - v1
Checksum:i38F62227E7CD0EC9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002293 Genomic DNA. Translation: ADP76014.1.
RefSeqiWP_013401632.1. NC_014650.1.
YP_003990625.1. NC_014650.1.

Genome annotation databases

EnsemblBacteriaiADP76014; ADP76014; GY4MC1_3351.
GeneIDi9930256.
KEGGigmc:GY4MC1_3351.
PATRICi42637190. VBIGeoSp111282_3694.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002293 Genomic DNA. Translation: ADP76014.1.
RefSeqiWP_013401632.1. NC_014650.1.
YP_003990625.1. NC_014650.1.

3D structure databases

ProteinModelPortaliE3IFL5.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADP76014; ADP76014; GY4MC1_3351.
GeneIDi9930256.
KEGGigmc:GY4MC1_3351.
PATRICi42637190. VBIGeoSp111282_3694.

Phylogenomic databases

HOGENOMiHOG000029867.
KOiK00557.
OMAiGFELEHM.

Enzyme and pathway databases

BioCyciGSP581103:GHT2-3451-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
3.40.50.150. 1 hit.
InterProiIPR001566. 23S_rRNA_MeTrfase_RlmD.
IPR030390. MeTrfase_TrmA_AS.
IPR030391. MeTrfase_TrmA_CS.
IPR012340. NA-bd_OB-fold.
IPR029063. SAM-dependent_MTases.
IPR002792. TRAM_dom.
IPR010280. U5_MeTrfase_fam.
[Graphical view]
PfamiPF01938. TRAM. 1 hit.
PF05958. tRNA_U5-meth_tr. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
SSF53335. SSF53335. 1 hit.
TIGRFAMsiTIGR00479. rumA. 1 hit.
PROSITEiPS51687. SAM_MT_RNA_M5U. 1 hit.
PS50926. TRAM. 1 hit.
PS01230. TRMA_1. 1 hit.
PS01231. TRMA_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome of Geobacillus sp. Y4.1MC1."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Chertkov O., Zhang X., Detter J.C., Han C., Tapia R., Land M., Hauser L., Jeffries C., Kyrpides N., Ivanova N., Ovchinnikova G.
    , Brumm P., Mead D., Woyke T.
    Submitted (OCT-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Y4.1MC1Imported.

Entry informationi

Entry nameiE3IFL5_GEOS0
AccessioniPrimary (citable) accession number: E3IFL5
Entry historyi
Integrated into UniProtKB/TrEMBL: January 11, 2011
Last sequence update: January 11, 2011
Last modified: February 4, 2015
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.