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E3I482

- E3I482_RHOVT

UniProt

E3I482 - E3I482_RHOVT

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Protein
Ribulose bisphosphate carboxylase large chain
Gene
cbbL, Rvan_0010
Organism
Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299)
Status
Unreviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site By similarity.UniRule annotation

Catalytic activityi

2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O.UniRule annotation
3-phospho-D-glycerate + 2-phosphoglycolate = D-ribulose 1,5-bisphosphate + O2.UniRule annotation

Cofactori

Binds 1 magnesium ion per subunit By similarity.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei125 – 1251Substrate; in homodimeric partner By similarityUniRule annotation
Binding sitei175 – 1751Substrate By similarityUniRule annotation
Active sitei177 – 1771Proton acceptor By similarityUniRule annotation
Binding sitei179 – 1791Substrate By similarityUniRule annotation
Metal bindingi203 – 2031Magnesium; via carbamate group By similarityUniRule annotation
Metal bindingi205 – 2051Magnesium By similarityUniRule annotation
Metal bindingi206 – 2061Magnesium By similarityUniRule annotation
Active sitei295 – 2951Proton acceptor By similarityUniRule annotation
Binding sitei296 – 2961Substrate By similarityUniRule annotation
Binding sitei328 – 3281Substrate By similarityUniRule annotation
Sitei335 – 3351Transition state stabilizer By similarityUniRule annotation
Binding sitei380 – 3801Substrate By similarityUniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: UniProtKB-HAMAP
  2. monooxygenase activity Source: UniProtKB-KW
  3. ribulose-bisphosphate carboxylase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. reductive pentose-phosphate cycle Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotationImported, MonooxygenaseUniRule annotation, Oxidoreductase

Keywords - Biological processi

Calvin cycleUniRule annotation, Carbon dioxide fixationUniRule annotation, PhotosynthesisUniRule annotation

Keywords - Ligandi

MagnesiumUniRule annotation, Metal-bindingUniRule annotation

Enzyme and pathway databases

BioCyciRVAN648757:GHZT-10-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribulose bisphosphate carboxylase large chainUniRule annotation (EC:4.1.1.39UniRule annotation)
Short name:
RuBisCO large subunitUniRule annotation
Gene namesi
Name:cbbLUniRule annotation
Ordered Locus Names:Rvan_0010Imported
OrganismiRhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299)Imported
Taxonomic identifieri648757 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesHyphomicrobiaceaeRhodomicrobium
ProteomesiUP000001399: Chromosome

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei203 – 2031N6-carboxylysine By similarityUniRule annotation

Interactioni

Subunit structurei

Heterohexadecamer of 8 large chains and 8 small chains By similarity.UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliE3I482.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

HOGENOMiHOG000230831.
KOiK01601.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
HAMAPiMF_01338. RuBisCO_L_type1.
InterProiIPR020878. RuBisCo_large_chain_AS.
IPR020888. RuBisCO_lsu.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
IPR017444. RuBisCO_lsu_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEiPS00157. RUBISCO_LARGE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E3I482-1 [UniParc]FASTAAdd to Basket

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MSDKSETVKG EDRYKAGVMS YKKMGYWEPD YQPKETDLIA LFRVTPQDGV    50
DPIEASAAVA GESSTATWTV VWTDRLTASE KYRAKCYRVD PVPNAPGSYF 100
AYIAYDLDLF EGGSISNLTA SIIGNVFGFK PLKALRLEDM RLPVAYVKTF 150
DGPPAGIIVE RERLDKFGRP LLGATVKPKL GLSGRNYGRV VYEALKGGLD 200
FTKDDENINS QPFMHWRERF LYCMEAVNKA QAETGEIKGS YLNITAGTME 250
EMYKRAEYAK ELGSCIVMID LVIGYVAIQS ISKWARDNNM LLHLHRAGHS 300
TYTRQKSHGV SFRVISKWMR LAGVDHIHAG TVVGKLEGDP LTTAGYYDIL 350
REDFVPQNLE HGVFFDQPWA SLGKVMPVAS GGIHAGQMHQ LIHYLGEDVV 400
LQFGGGTIGH PYGIQAGATA NRVALEAMIF ARNEGRDYLA EGPQILKDAA 450
KTCTPLRQAL DTWGDVTFDY TSTDTPDFVP TPTAS 485
Length:485
Mass (Da):53,687
Last modified:January 11, 2011 - v1
Checksum:iCACE029CBD3E6F4C
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002292 Genomic DNA. Translation: ADP69301.1.
RefSeqiYP_004010400.1. NC_014664.1.

Genome annotation databases

EnsemblBacteriaiADP69301; ADP69301; Rvan_0010.
GeneIDi9930774.
KEGGirva:Rvan_0010.
PATRICi42667006. VBIRhoVan113057_0010.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002292 Genomic DNA. Translation: ADP69301.1 .
RefSeqi YP_004010400.1. NC_014664.1.

3D structure databases

ProteinModelPortali E3I482.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADP69301 ; ADP69301 ; Rvan_0010 .
GeneIDi 9930774.
KEGGi rva:Rvan_0010.
PATRICi 42667006. VBIRhoVan113057_0010.

Phylogenomic databases

HOGENOMi HOG000230831.
KOi K01601.

Enzyme and pathway databases

BioCyci RVAN648757:GHZT-10-MONOMER.

Family and domain databases

Gene3Di 3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
HAMAPi MF_01338. RuBisCO_L_type1.
InterProi IPR020878. RuBisCo_large_chain_AS.
IPR020888. RuBisCO_lsu.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
IPR017444. RuBisCO_lsu_N.
[Graphical view ]
Pfami PF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view ]
SUPFAMi SSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEi PS00157. RUBISCO_LARGE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299.

Entry informationi

Entry nameiE3I482_RHOVT
AccessioniPrimary (citable) accession number: E3I482
Entry historyi
Integrated into UniProtKB/TrEMBL: January 11, 2011
Last sequence update: January 11, 2011
Last modified: June 11, 2014
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Miscellaneous

The basic functional RuBisCO is composed of a large chain homodimer in a "head-to-tail" conformation. In form I RuBisCO this homodimer is arranged in a barrel-like tetramer with the small subunits forming a tetrameric "cap" on each end of the "barrel" By similarity.UniRule annotation

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

Similar proteinsi