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Protein
Submitted name:

Pyridoxal-dependent decarboxylase

Gene

Rvan_3416

Organism
Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotation

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciRVAN648757:GHZT-3462-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Pyridoxal-dependent decarboxylaseImported
Gene namesi
Ordered Locus Names:Rvan_3416Imported
OrganismiRhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299)Imported
Taxonomic identifieri648757 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesHyphomicrobiaceaeRhodomicrobium
ProteomesiUP000001399 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi648757.Rvan_3416.

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000282553.
KOiK01580.
OMAiSEEAHYC.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.

Sequencei

Sequence statusi: Complete.

E3I3F0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASEKLTEIS QHPSPSEDAG ADVADYLLGS DLSKLRGWVE ARSASFLRSA
60 70 80 90 100
DAGERSPIRR VREKFRSCEV PDTAMALDDY LSLLDQDVLP HCSSLASPRY
110 120 130 140 150
LGHMTSPIPG FLPELGRLVQ TLNQNVVKME TSGSLTFVER QVLGMLHKET
160 170 180 190 200
YGFDTAFYDR RVQDRDSTLG LFASGGTIAN LTALRAAKQR ASVHAGGGAR
210 220 230 240 250
MAVIGSELMH YSFAKGADLM GLELRRVPVD EQNRMLPAAL EREIEACEAE
260 270 280 290 300
GVTVAALIAI AGTTEFGSVD PLASICRLGQ ARNIHVHVDA AWGGGFLLSP
310 320 330 340 350
RNRHILAGIE LADTVTIDGH KQLMVPLGCG MLFFRDPEVS KTIMHHAPYA
360 370 380 390 400
VRPNSEDQGR FTLEGTRPAT AIYVHAALHL IGKSVYDALF SASLERTRIM
410 420 430 440 450
ARHIEGMPEF ELTSRPDMNI LTYRYIPEAM RGTTPGPADN HRISRFNVAL
460 470 480 490 500
QRAQRDKGDS FVSRTFRPVS RHGDEPLALL RAVLLNPRTT EDDILFLLRD
510
QVGIARELEN SPAFHE
Length:516
Mass (Da):56,792
Last modified:January 11, 2011 - v1
Checksum:iE28006950D92412C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002292 Genomic DNA. Translation: ADP72598.1.
RefSeqiWP_013420956.1. NC_014664.1.
YP_004013697.1. NC_014664.1.

Genome annotation databases

EnsemblBacteriaiADP72598; ADP72598; Rvan_3416.
KEGGirva:Rvan_3416.
PATRICi42674281. VBIRhoVan113057_3601.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002292 Genomic DNA. Translation: ADP72598.1.
RefSeqiWP_013420956.1. NC_014664.1.
YP_004013697.1. NC_014664.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi648757.Rvan_3416.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADP72598; ADP72598; Rvan_3416.
KEGGirva:Rvan_3416.
PATRICi42674281. VBIRhoVan113057_3601.

Phylogenomic databases

HOGENOMiHOG000282553.
KOiK01580.
OMAiSEEAHYC.

Enzyme and pathway databases

BioCyciRVAN648757:GHZT-3462-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299Imported.

Entry informationi

Entry nameiE3I3F0_RHOVT
AccessioniPrimary (citable) accession number: E3I3F0
Entry historyi
Integrated into UniProtKB/TrEMBL: January 11, 2011
Last sequence update: January 11, 2011
Last modified: June 24, 2015
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.