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Protein
Submitted name:

DNA ligase D

Gene

Rvan_0633

Organism
Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRVAN648757:GHZT-639-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Rvan_0633Imported
OrganismiRhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299)Imported
Taxonomic identifieri648757 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesHyphomicrobiaceaeRhodomicrobium
ProteomesiUP000001399 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E3HZV9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPKGAASAPA KSKRGAPAVS AKGDLTRYRQ KRDFAKTPEP SGTKQLAKAP
60 70 80 90 100
ELRFVIQKHA ARRLHYDLRL ELDGVYKSWA VTKGPSLDPA EKRLAVHVED
110 120 130 140 150
HPLDYGDFEG IIPPGEYGGG TVMVWDRGTW EPEGDPAKGY AKGHLAFTAH
160 170 180 190 200
GEKLKGRWHL IHIKPRPGEK DQQWLLFKSD DEFARAAGDG DILEDAPDSV
210 220 230 240 250
ATGRSIDEIA RDGEAVWSGK AGLVKGELSP AEGAEEWPAL PKRKRRRTLA
260 270 280 290 300
DATGAAGAIR ADRRASDEDA AKTTSRRIAR RVAKAPVAQD ADPVAAAPPP
310 320 330 340 350
AKSPARVAVA TTAPAGAAKA VAGAKKAPFP GFVAPCLAQL CERAPDGDNW
360 370 380 390 400
LHEIKFDGYR VMALIENGRV RLMTRSGLDW TERFPAIAAA FAAFPAASAI
410 420 430 440 450
VDGEAVVEDH TGVSSFSALQ EALSTRKSKA DIVFFAFDLL YFDGYDLRGA
460 470 480 490 500
SLESRKAALA PLVEAAAASA LRYSDHVIGH GPAMVENACR LGLEGIVSKR
510 520 530 540 550
LDAPYRSGRH GAWLKTKCTN RQEFVVGGYA PSTAMHGAIG SLALGAYDNG
560 570 580 590 600
ALLHVGRAGT GFTQATAKAL FKQLQPLRRA TSPFANALSS EEKRGLVHVE
610 620 630 640 650
PQLVAEVEFR GWTGDRHLRH AAFKGLREDK PATEVLFEMP RQQTAPDAAA
660 670 680 690 700
RERTTPARAR ATPGKGGTVD FEGIRLTHPD RILWEGQGLT KLGLADYYAE
710 720 730 740 750
VADHILPFIT GRPLALVRCP SGQGGDCFYQ KRSFAGLTDA VEVVPIADKD
760 770 780 790 800
GDTEALVIHD LRGLINLVQS NVLEIHPWGA RIDDLERPDT LIFDLDPGDG
810 820 830 840 850
VGFEAVMDGA REVRRRLGDL GIESWVKTTG GKGLHVVSPL VPDLGWEELK
860 870 880 890 900
AFAQGIAQTM ERDAPQRFVS TMAKKARDGK IYVDYLRNGR GSTAIAPYST
910 920 930 940 950
RAREGAPVAT PLGWDELGPA LTPQRFTVET MGRRLAALKS DPWAGYFENP
960 970
QRIESLGGRA ARQPRRRPKS
Length:970
Mass (Da):104,857
Last modified:January 11, 2011 - v1
Checksum:i0B7BC238DB1E20C1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002292 Genomic DNA. Translation: ADP69910.1.
RefSeqiWP_013418314.1. NC_014664.1.
YP_004011009.1. NC_014664.1.

Genome annotation databases

EnsemblBacteriaiADP69910; ADP69910; Rvan_0633.
KEGGirva:Rvan_0633.
PATRICi42668316. VBIRhoVan113057_0659.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002292 Genomic DNA. Translation: ADP69910.1.
RefSeqiWP_013418314.1. NC_014664.1.
YP_004011009.1. NC_014664.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADP69910; ADP69910; Rvan_0633.
KEGGirva:Rvan_0633.
PATRICi42668316. VBIRhoVan113057_0659.

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.

Enzyme and pathway databases

BioCyciRVAN648757:GHZT-639-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299Imported.

Entry informationi

Entry nameiE3HZV9_RHOVT
AccessioniPrimary (citable) accession number: E3HZV9
Entry historyi
Integrated into UniProtKB/TrEMBL: January 11, 2011
Last sequence update: January 11, 2011
Last modified: April 29, 2015
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.