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E3HZV9

- E3HZV9_RHOVT

UniProt

E3HZV9 - E3HZV9_RHOVT

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Protein
Submitted name:

DNA ligase D

Gene
Rvan_0633
Organism
Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRVAN648757:GHZT-639-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Rvan_0633Imported
OrganismiRhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299)Imported
Taxonomic identifieri648757 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesHyphomicrobiaceaeRhodomicrobium
ProteomesiUP000001399: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E3HZV9-1 [UniParc]FASTAAdd to Basket

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MPKGAASAPA KSKRGAPAVS AKGDLTRYRQ KRDFAKTPEP SGTKQLAKAP    50
ELRFVIQKHA ARRLHYDLRL ELDGVYKSWA VTKGPSLDPA EKRLAVHVED 100
HPLDYGDFEG IIPPGEYGGG TVMVWDRGTW EPEGDPAKGY AKGHLAFTAH 150
GEKLKGRWHL IHIKPRPGEK DQQWLLFKSD DEFARAAGDG DILEDAPDSV 200
ATGRSIDEIA RDGEAVWSGK AGLVKGELSP AEGAEEWPAL PKRKRRRTLA 250
DATGAAGAIR ADRRASDEDA AKTTSRRIAR RVAKAPVAQD ADPVAAAPPP 300
AKSPARVAVA TTAPAGAAKA VAGAKKAPFP GFVAPCLAQL CERAPDGDNW 350
LHEIKFDGYR VMALIENGRV RLMTRSGLDW TERFPAIAAA FAAFPAASAI 400
VDGEAVVEDH TGVSSFSALQ EALSTRKSKA DIVFFAFDLL YFDGYDLRGA 450
SLESRKAALA PLVEAAAASA LRYSDHVIGH GPAMVENACR LGLEGIVSKR 500
LDAPYRSGRH GAWLKTKCTN RQEFVVGGYA PSTAMHGAIG SLALGAYDNG 550
ALLHVGRAGT GFTQATAKAL FKQLQPLRRA TSPFANALSS EEKRGLVHVE 600
PQLVAEVEFR GWTGDRHLRH AAFKGLREDK PATEVLFEMP RQQTAPDAAA 650
RERTTPARAR ATPGKGGTVD FEGIRLTHPD RILWEGQGLT KLGLADYYAE 700
VADHILPFIT GRPLALVRCP SGQGGDCFYQ KRSFAGLTDA VEVVPIADKD 750
GDTEALVIHD LRGLINLVQS NVLEIHPWGA RIDDLERPDT LIFDLDPGDG 800
VGFEAVMDGA REVRRRLGDL GIESWVKTTG GKGLHVVSPL VPDLGWEELK 850
AFAQGIAQTM ERDAPQRFVS TMAKKARDGK IYVDYLRNGR GSTAIAPYST 900
RAREGAPVAT PLGWDELGPA LTPQRFTVET MGRRLAALKS DPWAGYFENP 950
QRIESLGGRA ARQPRRRPKS 970
Length:970
Mass (Da):104,857
Last modified:January 11, 2011 - v1
Checksum:i0B7BC238DB1E20C1
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002292 Genomic DNA. Translation: ADP69910.1.
RefSeqiWP_013418314.1. NC_014664.1.
YP_004011009.1. NC_014664.1.

Genome annotation databases

EnsemblBacteriaiADP69910; ADP69910; Rvan_0633.
GeneIDi9931403.
KEGGirva:Rvan_0633.
PATRICi42668316. VBIRhoVan113057_0659.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002292 Genomic DNA. Translation: ADP69910.1 .
RefSeqi WP_013418314.1. NC_014664.1.
YP_004011009.1. NC_014664.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADP69910 ; ADP69910 ; Rvan_0633 .
GeneIDi 9931403.
KEGGi rva:Rvan_0633.
PATRICi 42668316. VBIRhoVan113057_0659.

Phylogenomic databases

HOGENOMi HOG000222509.
KOi K01971.

Enzyme and pathway databases

BioCyci RVAN648757:GHZT-639-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299.

Entry informationi

Entry nameiE3HZV9_RHOVT
AccessioniPrimary (citable) accession number: E3HZV9
Entry historyi
Integrated into UniProtKB/TrEMBL: January 11, 2011
Last sequence update: January 11, 2011
Last modified: September 3, 2014
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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