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E3HZV9 (E3HZV9_RHOVT) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 20. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length970 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ADP69910.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
E3HZV9 [UniParc].

Last modified January 11, 2011. Version 1.
Checksum: 0B7BC238DB1E20C1

FASTA970104,857
        10         20         30         40         50         60 
MPKGAASAPA KSKRGAPAVS AKGDLTRYRQ KRDFAKTPEP SGTKQLAKAP ELRFVIQKHA 

        70         80         90        100        110        120 
ARRLHYDLRL ELDGVYKSWA VTKGPSLDPA EKRLAVHVED HPLDYGDFEG IIPPGEYGGG 

       130        140        150        160        170        180 
TVMVWDRGTW EPEGDPAKGY AKGHLAFTAH GEKLKGRWHL IHIKPRPGEK DQQWLLFKSD 

       190        200        210        220        230        240 
DEFARAAGDG DILEDAPDSV ATGRSIDEIA RDGEAVWSGK AGLVKGELSP AEGAEEWPAL 

       250        260        270        280        290        300 
PKRKRRRTLA DATGAAGAIR ADRRASDEDA AKTTSRRIAR RVAKAPVAQD ADPVAAAPPP 

       310        320        330        340        350        360 
AKSPARVAVA TTAPAGAAKA VAGAKKAPFP GFVAPCLAQL CERAPDGDNW LHEIKFDGYR 

       370        380        390        400        410        420 
VMALIENGRV RLMTRSGLDW TERFPAIAAA FAAFPAASAI VDGEAVVEDH TGVSSFSALQ 

       430        440        450        460        470        480 
EALSTRKSKA DIVFFAFDLL YFDGYDLRGA SLESRKAALA PLVEAAAASA LRYSDHVIGH 

       490        500        510        520        530        540 
GPAMVENACR LGLEGIVSKR LDAPYRSGRH GAWLKTKCTN RQEFVVGGYA PSTAMHGAIG 

       550        560        570        580        590        600 
SLALGAYDNG ALLHVGRAGT GFTQATAKAL FKQLQPLRRA TSPFANALSS EEKRGLVHVE 

       610        620        630        640        650        660 
PQLVAEVEFR GWTGDRHLRH AAFKGLREDK PATEVLFEMP RQQTAPDAAA RERTTPARAR 

       670        680        690        700        710        720 
ATPGKGGTVD FEGIRLTHPD RILWEGQGLT KLGLADYYAE VADHILPFIT GRPLALVRCP 

       730        740        750        760        770        780 
SGQGGDCFYQ KRSFAGLTDA VEVVPIADKD GDTEALVIHD LRGLINLVQS NVLEIHPWGA 

       790        800        810        820        830        840 
RIDDLERPDT LIFDLDPGDG VGFEAVMDGA REVRRRLGDL GIESWVKTTG GKGLHVVSPL 

       850        860        870        880        890        900 
VPDLGWEELK AFAQGIAQTM ERDAPQRFVS TMAKKARDGK IYVDYLRNGR GSTAIAPYST 

       910        920        930        940        950        960 
RAREGAPVAT PLGWDELGPA LTPQRFTVET MGRRLAALKS DPWAGYFENP QRIESLGGRA 

       970 
ARQPRRRPKS 

« Hide

References

[1]"Genome sequences of eight morphologically diverse alphaproteobacteria."
US DOE Joint Genome Institute
Brown P.J., Kysela D.T., Buechlein A., Hemmerich C., Brun Y.V.
J. Bacteriol. 193:4567-4568(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002292 Genomic DNA. Translation: ADP69910.1.
RefSeqYP_004011009.1. NC_014664.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADP69910; ADP69910; Rvan_0633.
GeneID9931403.
KEGGrva:Rvan_0633.
PATRIC42668316. VBIRhoVan113057_0659.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000222509.
KOK01971.

Enzyme and pathway databases

BioCycRVAN648757:GHZT-639-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE3HZV9_RHOVT
AccessionPrimary (citable) accession number: E3HZV9
Entry history
Integrated into UniProtKB/TrEMBL: January 11, 2011
Last sequence update: January 11, 2011
Last modified: April 16, 2014
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)