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E3HZV9

- E3HZV9_RHOVT

UniProt

E3HZV9 - E3HZV9_RHOVT

Protein
Submitted name:

DNA ligase D

Gene

Rvan_0633

Organism
Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 22 (01 Oct 2014)
      Sequence version 1 (11 Jan 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciRVAN648757:GHZT-639-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:Rvan_0633Imported
    OrganismiRhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299)Imported
    Taxonomic identifieri648757 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesHyphomicrobiaceaeRhodomicrobium
    ProteomesiUP000001399: Chromosome

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000222509.
    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    E3HZV9-1 [UniParc]FASTAAdd to Basket

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    MPKGAASAPA KSKRGAPAVS AKGDLTRYRQ KRDFAKTPEP SGTKQLAKAP    50
    ELRFVIQKHA ARRLHYDLRL ELDGVYKSWA VTKGPSLDPA EKRLAVHVED 100
    HPLDYGDFEG IIPPGEYGGG TVMVWDRGTW EPEGDPAKGY AKGHLAFTAH 150
    GEKLKGRWHL IHIKPRPGEK DQQWLLFKSD DEFARAAGDG DILEDAPDSV 200
    ATGRSIDEIA RDGEAVWSGK AGLVKGELSP AEGAEEWPAL PKRKRRRTLA 250
    DATGAAGAIR ADRRASDEDA AKTTSRRIAR RVAKAPVAQD ADPVAAAPPP 300
    AKSPARVAVA TTAPAGAAKA VAGAKKAPFP GFVAPCLAQL CERAPDGDNW 350
    LHEIKFDGYR VMALIENGRV RLMTRSGLDW TERFPAIAAA FAAFPAASAI 400
    VDGEAVVEDH TGVSSFSALQ EALSTRKSKA DIVFFAFDLL YFDGYDLRGA 450
    SLESRKAALA PLVEAAAASA LRYSDHVIGH GPAMVENACR LGLEGIVSKR 500
    LDAPYRSGRH GAWLKTKCTN RQEFVVGGYA PSTAMHGAIG SLALGAYDNG 550
    ALLHVGRAGT GFTQATAKAL FKQLQPLRRA TSPFANALSS EEKRGLVHVE 600
    PQLVAEVEFR GWTGDRHLRH AAFKGLREDK PATEVLFEMP RQQTAPDAAA 650
    RERTTPARAR ATPGKGGTVD FEGIRLTHPD RILWEGQGLT KLGLADYYAE 700
    VADHILPFIT GRPLALVRCP SGQGGDCFYQ KRSFAGLTDA VEVVPIADKD 750
    GDTEALVIHD LRGLINLVQS NVLEIHPWGA RIDDLERPDT LIFDLDPGDG 800
    VGFEAVMDGA REVRRRLGDL GIESWVKTTG GKGLHVVSPL VPDLGWEELK 850
    AFAQGIAQTM ERDAPQRFVS TMAKKARDGK IYVDYLRNGR GSTAIAPYST 900
    RAREGAPVAT PLGWDELGPA LTPQRFTVET MGRRLAALKS DPWAGYFENP 950
    QRIESLGGRA ARQPRRRPKS 970
    Length:970
    Mass (Da):104,857
    Last modified:January 11, 2011 - v1
    Checksum:i0B7BC238DB1E20C1
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002292 Genomic DNA. Translation: ADP69910.1.
    RefSeqiWP_013418314.1. NC_014664.1.
    YP_004011009.1. NC_014664.1.

    Genome annotation databases

    EnsemblBacteriaiADP69910; ADP69910; Rvan_0633.
    GeneIDi9931403.
    KEGGirva:Rvan_0633.
    PATRICi42668316. VBIRhoVan113057_0659.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002292 Genomic DNA. Translation: ADP69910.1 .
    RefSeqi WP_013418314.1. NC_014664.1.
    YP_004011009.1. NC_014664.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADP69910 ; ADP69910 ; Rvan_0633 .
    GeneIDi 9931403.
    KEGGi rva:Rvan_0633.
    PATRICi 42668316. VBIRhoVan113057_0659.

    Phylogenomic databases

    HOGENOMi HOG000222509.
    KOi K01971.

    Enzyme and pathway databases

    BioCyci RVAN648757:GHZT-639-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299Imported.

    Entry informationi

    Entry nameiE3HZV9_RHOVT
    AccessioniPrimary (citable) accession number: E3HZV9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: January 11, 2011
    Last sequence update: January 11, 2011
    Last modified: October 1, 2014
    This is version 22 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3