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E3H835 (E3H835_ILYPC) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 21. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Elongation factor Tu HAMAP-Rule MF_00118
Short name=EF-Tu HAMAP-Rule MF_00118
Gene names
Name:tuf HAMAP-Rule MF_00118
Ordered Locus Names:Ilyop_1486 EMBL ADO83266.1, Ilyop_1812 EMBL ADO83583.1
OrganismIlyobacter polytropus (strain DSM 2926 / CuHBu1) [Complete proteome] [HAMAP] EMBL ADO83266.1
Taxonomic identifier572544 [NCBI]
Taxonomic lineageBacteria › Fusobacteria › Fusobacteriales › Fusobacteriaceae › Ilyobacter ›

Protein attributes

Sequence length394 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. RuleBase RU000325 HAMAP-Rule MF_00118

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00118

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00118.

Sequence similarities

Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. RuleBase RU000325 HAMAP-Rule MF_00118

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding19 – 268GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding81 – 855GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding136 – 1394GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence LengthMass (Da)Tools
E3H835 [UniParc].

Last modified January 11, 2011. Version 1.
Checksum: 81C10A465D541E86

FASTA39442,942
        10         20         30         40         50         60 
MAKEKFSRSK PHVNVGTIGH VDHGKTTTTA AISKVLSDKG LAKKVDFANI DQAPEERERG 

        70         80         90        100        110        120 
ITINTAHIEY ETANRHYAHV DCPGHADYVK NMITGAAQMD GAILVVSAAD GPMPQTREHI 

       130        140        150        160        170        180 
LLSRQVGVPY IVVYLNKADM VDDEELLELV EMEVRELLSD YGFPGDDIPV IAGSALGALN 

       190        200        210        220        230        240 
GEAQWVAKIE ELMDAVDSYI PSPERAVDQP FLMPVEDVFT ITGRGTVVTG RVERGIIKVG 

       250        260        270        280        290        300 
EEIEIIGIKD TQKAVCTGVE MFRKLLDQGE AGDNIGALLR GIKKEDVERG QVLAKPGTIT 

       310        320        330        340        350        360 
PHTGFTSEVY VLTKEEGGRH TPFFTGYRPQ FYFRTTDITG AINLPEGVEM VMPGDNVEMT 

       370        380        390 
VELIHPIAME EGLRFAIREG GRTVASGVVA TITK

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1)."
MSikorski J., Chertkov O., Lapidus A., Nolan M., Lucas S., Glavina Del Rio T., Tice H., Cheng J., Tapia R., Han C., Goodwin L., Pitluck S., Liolios K., Ivanova N., Mavromatis K., Mikhailova N., Pati A., Chen A. expand/collapse author list , Palaniappan K., Land M., Hauser L., Cheng Y., Jeffries C., Brambilla E., Yasawong M., Rohde M., Pukall R., Spring S., Goker, M., Woyke T., Bristow J., Eisen J., Markowitz V., Hugenholtz P., Kyrpides N., Klenk H.
Stand. Genomic Sci. 3:304-314(2010)
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 2926 / CuHBu1.
[2]"Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1)."
Sikorski J., Chertkov O., Lapidus A., Nolan M., Lucas S., Del Rio T.G., Tice H., Cheng J.F., Tapia R., Han C., Goodwin L., Pitluck S., Liolios K., Ivanova N., Mavromatis K., Mikhailova N., Pati A., Chen A. expand/collapse author list , Palaniappan K., Land M., Hauser L., Chang Y.J., Jeffries C.D., Brambilla E., Yasawong M., Rohde M., Pukall R., Spring S., Goker M., Woyke T., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.P.
Stand. Genomic Sci. 3:304-314(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: DSM 2926 EMBL ADO83266.1.
[3]"The complete chromosome of Ilyobacter polytrpous DSM 2926."
US DOE Joint Genome Institute (JGI-PGF)
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Ovchinnikova G., Chertkov O., Detter J.C., Han C., Tapia R., Land M. expand/collapse author list , Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Spring S., Pukall R., Steenblock K., Brambilla E., Klenk H.-P., Eisen J.A.
Submitted (OCT-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: DSM 2926 EMBL ADO83266.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002281 Genomic DNA. Translation: ADO83266.1.
CP002281 Genomic DNA. Translation: ADO83583.1.
RefSeqYP_003967614.1. NC_014632.1.
YP_003967931.1. NC_014632.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADO83266; ADO83266; Ilyop_1486.
ADO83583; ADO83583; Ilyop_1812.
GeneID9868994.
9869331.
KEGGipo:Ilyop_1486.
ipo:Ilyop_1812.
PATRIC42646699. VBIIlyPol34265_1531.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000229290.
KOK02358.

Enzyme and pathway databases

BioCycIPOL572544:GJ9I-1512-MONOMER.
IPOL572544:GJ9I-1849-MONOMER.

Family and domain databases

HAMAPMF_00118_B. EF_Tu_B.
InterProIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
IPR009000. Transl_elong_init/rib_B-barrel.
[Graphical view]
PfamPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSPR00315. ELONGATNFCT.
SUPFAMSSF50465. Elong_init_C. 1 hit.
SSF52540. SSF52540. 1 hit.
SSF50447. Translat_factor. 1 hit.
TIGRFAMsTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE3H835_ILYPC
AccessionPrimary (citable) accession number: E3H835
Entry history
Integrated into UniProtKB/TrEMBL: January 11, 2011
Last sequence update: January 11, 2011
Last modified: May 29, 2013
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info