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E3F392 (E3F392_KETVY) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 23. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Phosphopentomutase HAMAP-Rule MF_00740

EC=5.4.2.7 HAMAP-Rule MF_00740
Alternative name(s):
Phosphodeoxyribomutase HAMAP-Rule MF_00740
Gene names
Name:deoB HAMAP-Rule MF_00740
Ordered Locus Names:EIO_2167 EMBL ADO43269.1
OrganismKetogulonicigenium vulgare (strain Y25) [Complete proteome] [HAMAP] EMBL ADO43269.1
Taxonomic identifier880591 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeKetogulonicigenium

Protein attributes

Sequence length391 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Phosphotransfer between the C1 and C5 carbon atoms of pentose By similarity. HAMAP-Rule MF_00740 SAAS SAAS006124

Catalytic activity

2-deoxy-alpha-D-ribose 1-phosphate = 2-deoxy-alpha-D-ribose 5-phosphate. HAMAP-Rule MF_00740 SAAS SAAS006124

Alpha-D-ribose 1-phosphate = D-ribose 5-phosphate. HAMAP-Rule MF_00740 SAAS SAAS006124

Cofactor

Binds 1 or 2 manganese ions By similarity. HAMAP-Rule MF_00740 SAAS SAAS006124

Pathway

Metabolic intermediate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate from D-ribose 5-phosphate (route II): step 1/3. HAMAP-Rule MF_00740 SAAS SAAS006124

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00740 SAAS SAAS006124.

Sequence similarities

Belongs to the phosphopentomutase family. HAMAP-Rule MF_00740

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Metal binding101Manganese By similarity HAMAP-Rule MF_00740
Metal binding2981Manganese By similarity HAMAP-Rule MF_00740
Metal binding3341Manganese By similarity HAMAP-Rule MF_00740
Metal binding3351Manganese By similarity HAMAP-Rule MF_00740
Metal binding3461Manganese By similarity HAMAP-Rule MF_00740

Sequences

Sequence LengthMass (Da)Tools
E3F392 [UniParc].

Last modified January 11, 2011. Version 1.
Checksum: D116370C7EAA2D1D

FASTA39141,178
        10         20         30         40         50         60 
MPRAFLLVMD SAGIGGAPDA GQFFNGAVPD TGANTIGHIA QTRGLQVPVM ASLGLGAAIK 

        70         80         90        100        110        120 
AASGLLVDLP PPTLGAYGAA TEISPGKDTP SGHWEMAGVP VPWSWTYFPD IVPAFPGAVT 

       130        140        150        160        170        180 
ARICELAGTA GILGNCHASG TQVIDDLAEE HIRTGWPICY TSADSVLQIA AHEAHFGRAR 

       190        200        210        220        230        240 
LIDICAALAP MLHAMRVGRV IARPFIGDAA QGWQRTPYRR DFAIAPPAPT ILDRAKDAGH 

       250        260        270        280        290        300 
PVHAIGKIGD IFSMRGIDDC AKGRDADLMQ ALQARVADAA DGALVFANFV EFDTDYGHRR 

       310        320        330        340        350        360 
DVEGYARHLE WFDAALGRVI AALRPDDLLI VTADHGNDPT WVGSDHTRER VPVLVHGAGV 

       370        380        390 
RDLGPLAFVD MAASIAAHLG LPPNGIGRSF L 

« Hide

References

[1]"Complete genome sequence of the bacterium Ketogulonicigenium vulgare Y25."
Xiong X.H., Han S., Wang J.H., Jiang Z.H., Chen W., Jia N., Wei H.L., Cheng H., Yang Y.X., Zhu B., You S., He J.Y., Hou W., Chen M.X., Yu C.J., Jiao Y.H., Zhang W.C.
J. Bacteriol. 193:315-316(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Y25 EMBL ADO43269.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002224 Genomic DNA. Translation: ADO43269.1.
RefSeqYP_003964569.1. NC_014625.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADO43269; ADO43269; EIO_2167.
GeneID9872790.
KEGGkvu:EIO_2167.
PATRIC43496663. VBIKetVul170732_2407.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000008159.
KOK01839.
OMACHASGTE.

Enzyme and pathway databases

BioCycKVUL880591:GHQW-2167-MONOMER.
UniPathwayUPA00087; UER00173.

Family and domain databases

Gene3D3.30.70.1250. 1 hit.
3.40.720.10. 2 hits.
HAMAPMF_00740. Phosphopentomut.
InterProIPR017849. Alkaline_Pase-like_a/b/a.
IPR017850. Alkaline_phosphatase_core.
IPR010045. DeoB.
IPR006124. Metalloenzyme.
IPR024052. Phosphopentomutase_DeoB_cap.
[Graphical view]
PfamPF01676. Metalloenzyme. 1 hit.
[Graphical view]
PIRSFPIRSF001491. Ppentomutase. 1 hit.
SUPFAMSSF143856. SSF143856. 1 hit.
SSF53649. SSF53649. 2 hits.
TIGRFAMsTIGR01696. deoB. 1 hit.
ProtoNetSearch...

Entry information

Entry nameE3F392_KETVY
AccessionPrimary (citable) accession number: E3F392
Entry history
Integrated into UniProtKB/TrEMBL: January 11, 2011
Last sequence update: January 11, 2011
Last modified: February 19, 2014
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)