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Protein

Phosphopentomutase

Gene

deoB

Organism
Ketogulonicigenium vulgare (strain Y25)
Status
Unreviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Phosphotransfer between the C1 and C5 carbon atoms of pentose.UniRule annotationSAAS annotation

Catalytic activityi

2-deoxy-alpha-D-ribose 1-phosphate = 2-deoxy-alpha-D-ribose 5-phosphate.UniRule annotationSAAS annotation
Alpha-D-ribose 1-phosphate = D-ribose 5-phosphate.UniRule annotationSAAS annotation

Cofactori

Protein has several cofactor binding sites:
  • Mn2+UniRule annotationSAAS annotationNote: Binds 1 or 2 manganese ions.UniRule annotationSAAS annotation
  • Mn2+Note: Binds 1 or 2 manganese ions.

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi10 – 101ManganeseUniRule annotation
Metal bindingi298 – 2981ManganeseUniRule annotation
Metal bindingi334 – 3341ManganeseUniRule annotation
Metal bindingi335 – 3351ManganeseUniRule annotation
Metal bindingi346 – 3461ManganeseUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotationSAAS annotation

Keywords - Ligandi

ManganeseUniRule annotationSAAS annotation, Metal-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciKVUL880591:GHQW-2167-MONOMER.
UniPathwayiUPA00087; UER00173.

Names & Taxonomyi

Protein namesi
Recommended name:
PhosphopentomutaseUniRule annotationSAAS annotation (EC:5.4.2.7UniRule annotationSAAS annotation)
Alternative name(s):
PhosphodeoxyribomutaseUniRule annotation
Gene namesi
Name:deoBUniRule annotation
Ordered Locus Names:EIO_2167Imported
OrganismiKetogulonicigenium vulgare (strain Y25)Imported
Taxonomic identifieri880591 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeKetogulonicigenium
ProteomesiUP000006871 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotationSAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotation

Structurei

3D structure databases

ProteinModelPortaliE3F392.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the phosphopentomutase family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000008159.
KOiK01839.
OMAiYLGNCHA.

Family and domain databases

Gene3Di3.30.70.1250. 1 hit.
3.40.720.10. 2 hits.
HAMAPiMF_00740. Phosphopentomut.
InterProiIPR017849. Alkaline_Pase-like_a/b/a.
IPR017850. Alkaline_phosphatase_core.
IPR010045. DeoB.
IPR006124. Metalloenzyme.
IPR024052. Phosphopentomutase_DeoB_cap.
[Graphical view]
PfamiPF01676. Metalloenzyme. 1 hit.
[Graphical view]
PIRSFiPIRSF001491. Ppentomutase. 1 hit.
SUPFAMiSSF143856. SSF143856. 1 hit.
SSF53649. SSF53649. 2 hits.
TIGRFAMsiTIGR01696. deoB. 1 hit.

Sequencei

Sequence statusi: Complete.

E3F392-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPRAFLLVMD SAGIGGAPDA GQFFNGAVPD TGANTIGHIA QTRGLQVPVM
60 70 80 90 100
ASLGLGAAIK AASGLLVDLP PPTLGAYGAA TEISPGKDTP SGHWEMAGVP
110 120 130 140 150
VPWSWTYFPD IVPAFPGAVT ARICELAGTA GILGNCHASG TQVIDDLAEE
160 170 180 190 200
HIRTGWPICY TSADSVLQIA AHEAHFGRAR LIDICAALAP MLHAMRVGRV
210 220 230 240 250
IARPFIGDAA QGWQRTPYRR DFAIAPPAPT ILDRAKDAGH PVHAIGKIGD
260 270 280 290 300
IFSMRGIDDC AKGRDADLMQ ALQARVADAA DGALVFANFV EFDTDYGHRR
310 320 330 340 350
DVEGYARHLE WFDAALGRVI AALRPDDLLI VTADHGNDPT WVGSDHTRER
360 370 380 390
VPVLVHGAGV RDLGPLAFVD MAASIAAHLG LPPNGIGRSF L
Length:391
Mass (Da):41,178
Last modified:January 11, 2011 - v1
Checksum:iD116370C7EAA2D1D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002224 Genomic DNA. Translation: ADO43269.1.
RefSeqiWP_013384919.1. NC_014625.1.
YP_003964569.1. NC_014625.1.

Genome annotation databases

EnsemblBacteriaiADO43269; ADO43269; EIO_2167.
KEGGikvu:EIO_2167.
PATRICi43496663. VBIKetVul170732_2407.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002224 Genomic DNA. Translation: ADO43269.1.
RefSeqiWP_013384919.1. NC_014625.1.
YP_003964569.1. NC_014625.1.

3D structure databases

ProteinModelPortaliE3F392.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADO43269; ADO43269; EIO_2167.
KEGGikvu:EIO_2167.
PATRICi43496663. VBIKetVul170732_2407.

Phylogenomic databases

HOGENOMiHOG000008159.
KOiK01839.
OMAiYLGNCHA.

Enzyme and pathway databases

UniPathwayiUPA00087; UER00173.
BioCyciKVUL880591:GHQW-2167-MONOMER.

Family and domain databases

Gene3Di3.30.70.1250. 1 hit.
3.40.720.10. 2 hits.
HAMAPiMF_00740. Phosphopentomut.
InterProiIPR017849. Alkaline_Pase-like_a/b/a.
IPR017850. Alkaline_phosphatase_core.
IPR010045. DeoB.
IPR006124. Metalloenzyme.
IPR024052. Phosphopentomutase_DeoB_cap.
[Graphical view]
PfamiPF01676. Metalloenzyme. 1 hit.
[Graphical view]
PIRSFiPIRSF001491. Ppentomutase. 1 hit.
SUPFAMiSSF143856. SSF143856. 1 hit.
SSF53649. SSF53649. 2 hits.
TIGRFAMsiTIGR01696. deoB. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Y25Imported.

Entry informationi

Entry nameiE3F392_KETVY
AccessioniPrimary (citable) accession number: E3F392
Entry historyi
Integrated into UniProtKB/TrEMBL: January 11, 2011
Last sequence update: January 11, 2011
Last modified: May 27, 2015
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.