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E3F210 (E3F210_KETVY) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 19. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
tRNA pseudouridine synthase B HAMAP-Rule MF_01080

EC=5.4.99.25 HAMAP-Rule MF_01080
Alternative name(s):
tRNA pseudouridine(55) synthase HAMAP-Rule MF_01080
tRNA pseudouridylate synthase HAMAP-Rule MF_01080
tRNA-uridine isomerase HAMAP-Rule MF_01080
Gene names
Name:truB HAMAP-Rule MF_01080 EMBL ADO43916.1
Ordered Locus Names:EIO_2845 EMBL ADO43916.1
OrganismKetogulonicigenium vulgare (strain Y25) [Complete proteome] [HAMAP] EMBL ADO43916.1
Taxonomic identifier880591 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeKetogulonicigenium

Protein attributes

Sequence length303 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs By similarity. HAMAP-Rule MF_01080

Catalytic activity

tRNA uridine55 = tRNA pseudouridine55. HAMAP-Rule MF_01080

Sequence similarities

Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. HAMAP-Rule MF_01080

Ontologies

Keywords
   Biological processtRNA processing HAMAP-Rule MF_01080 SAAS SAAS002501
   Molecular functionIsomerase HAMAP-Rule MF_01080 SAAS SAAS002501
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processtRNA pseudouridine synthesis

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Molecular_functionRNA binding

Inferred from electronic annotation. Source: InterPro

pseudouridine synthase activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site471Nucleophile By similarity HAMAP-Rule MF_01080

Sequences

Sequence LengthMass (Da)Tools
E3F210 [UniParc].

Last modified January 11, 2011. Version 1.
Checksum: E1BF7797674AC07E

FASTA30332,199
        10         20         30         40         50         60 
MARGRKGRNI SGWVIVDKPA GITSTAVVNK IRWAFDAQKA GHAGTLDPDA TGLLAVALGE 

        70         80         90        100        110        120 
ATKTIPYVTD ALKAYEFTVT FGASTSTDDA SGEVVATSDA RPTDAAIKEA LNAFVGDIMQ 

       130        140        150        160        170        180 
VPPAFSAIKI DGERAYDLAR EGQEFEIAAR PLFVESLLLV DRLDADHAVL EMTCGKGGYV 

       190        200        210        220        230        240 
RSIARDLGAA LGCYGHVLKL RRIWSSSFTL KGAVTMEQVE SLARTPALDD LLQPLEVALA 

       250        260        270        280        290        300 
DLPMVTCPEA SLTRFRNGNP ALVFPAPGLE FGDEAWVSVD GRALAIGQYR GSELHPARVI 


VGV 

« Hide

References

[1]"Complete genome sequence of the bacterium Ketogulonicigenium vulgare Y25."
Xiong X.H., Han S., Wang J.H., Jiang Z.H., Chen W., Jia N., Wei H.L., Cheng H., Yang Y.X., Zhu B., You S., He J.Y., Hou W., Chen M.X., Yu C.J., Jiao Y.H., Zhang W.C.
J. Bacteriol. 193:315-316(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Y25 EMBL ADO43916.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002224 Genomic DNA. Translation: ADO43916.1.
RefSeqYP_003965216.1. NC_014625.1.

3D structure databases

ProteinModelPortalE3F210.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADO43916; ADO43916; EIO_2845.
GeneID9873467.
KEGGkvu:EIO_2845.
PATRIC43498053. VBIKetVul170732_3089.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000231225.
KOK03177.
OMAQKVKRIF.

Enzyme and pathway databases

BioCycKVUL880591:GHQW-2844-MONOMER.

Family and domain databases

HAMAPMF_01080. TruB_bact.
InterProIPR002501. PsdUridine_synth.
IPR020103. PsdUridine_synth_cat_dom.
IPR014780. tRNA_psdUridine_synth_TruB.
[Graphical view]
PANTHERPTHR13767. PTHR13767. 1 hit.
PfamPF01509. TruB_N. 1 hit.
[Graphical view]
SUPFAMSSF55120. SSF55120. 1 hit.
TIGRFAMsTIGR00431. TruB. 1 hit.
ProtoNetSearch...

Entry information

Entry nameE3F210_KETVY
AccessionPrimary (citable) accession number: E3F210
Entry history
Integrated into UniProtKB/TrEMBL: January 11, 2011
Last sequence update: January 11, 2011
Last modified: February 19, 2014
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)