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E3EMP5 (E3EMP5_BIFBS) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 20. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:BBIF_0507 EMBL ADO52712.1
OrganismBifidobacterium bifidum (strain S17) [Complete proteome] [HAMAP] EMBL ADO52712.1
Taxonomic identifier883062 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeBifidobacterialesBifidobacteriaceaeBifidobacterium

Protein attributes

Sequence length1935 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
E3EMP5 [UniParc].

Last modified January 11, 2011. Version 1.
Checksum: 299ABBEA7070E160

FASTA1,935206,689
        10         20         30         40         50         60 
MAVRRLGGRI VAFAATVALS IPLGLLTNSA WAVEDATRSD STTQMSSTPE VVYSSAVDSK 

        70         80         90        100        110        120 
QNRTSDFDAN WKFMLSDSVQ AQDPAFDDSA WQQVDLPHDY SITQKYSQSN EAESAYLPGG 

       130        140        150        160        170        180 
TGWYRKSFTI DRDLAGKRIA INFDGVYMNA TVWFNGVKLG THPYGYSPFS FDLTGNAKFG 

       190        200        210        220        230        240 
EENTIVVKVE NRLPSSRWYS GSGIYRDVTL TVTDGVHVGN NGVAIKTPSL ATQNGGNVTM 

       250        260        270        280        290        300 
NLTTKVANDT KAAANITLKQ TVFPKGGKTD AAIGTVTTAS KSIAAGASAD VTSTITAASP 

       310        320        330        340        350        360 
KLWSIKNPNL YTVRTEVLNG GKVLDTYDTE YGFRWTGFDA TSGFSLNGEK VKLKGVSMHH 

       370        380        390        400        410        420 
DQGSLGAVAN RRAIERQVEI LQKMGVNSIR TTHNPAAKAL IDVCNEKGVL VVEEVFDMWN 

       430        440        450        460        470        480 
RSKNGNTEDY GKWFGQAIAG DNAVLGGDKD ETWAKFDLTS TINRDRNAPS VIMWSLGNEM 

       490        500        510        520        530        540 
MEGISGSVSG FPATSAKLVA WTKAADSTRP MTYGDNKIKA NWNESNTMGD NLTANGGVVG 

       550        560        570        580        590        600 
TNYSNGANYD KIRTDHPSWA IYGSETASAI NSRGIYNRTT GGAQSSDKQL TSYDNSAVGW 

       610        620        630        640        650        660 
GAVASSAWYD VVQRDFVAGT YVWTGFDYLG EPTPWNGTVS GAVGSWPSPK NSYFGIVDTA 

       670        680        690        700        710        720 
GFPKDTYYFY QSQWNDDVHT LHILPAWNEN VVAKGSGNNV PVVVYTDAAK VKLYFTPKGS 

       730        740        750        760        770        780 
TEKRLIGEKS FTKKTTAAGY TYQVYEGTDK DSTAHKNMYL TWNVPWAEGT ISAEAYDENN 

       790        800        810        820        830        840 
RLIPEGSTEG NASVTTTGKA AKLKADADRK TITADGKDLS YIEVDVTDAN GHIVPDAANR 

       850        860        870        880        890        900 
VTFDVKGAGK LVGVDNGSSP DHDSYQADNR KAFSGKVLAI VQSTKEAGEI TVTAKADGLQ 

       910        920        930        940        950        960 
SSTVKIATTA VPGTSTEKTV RSFYYSRNYY VKTGNKPILP SDVEVRYSDG TSDRQNVTWD 

       970        980        990       1000       1010       1020 
AVSDDQIAKA GSFSVAGTVA GQKISVRVTM IDEIGALLNY SASTPVGTPA VLPGSRPAVL 

      1030       1040       1050       1060       1070       1080 
PDGTVTSANF AVHWTKPADT VYNTAGTVKV PGTATVFGKE FKVTATIRVQ RSQVTIGSSV 

      1090       1100       1110       1120       1130       1140 
SGNALRLTQN IPADKQSDTL DAIKDGSTTV DANTGGGANP SAWTNWAYSK AGHNTAEITF 

      1150       1160       1170       1180       1190       1200 
EYATEQQLGQ IVMYFFRDSN AVRFPDAGKT KIQISADGKN WTDLAATETI AAQESSDRVK 

      1210       1220       1230       1240       1250       1260 
PYTYDFAPVG ATFVKVTVTN ADTTTPSGVV CAGLTEIELK TATSKFVTNT SAALSSLTVN 

      1270       1280       1290       1300       1310       1320 
GTKVSDSVLA AGSYNTPAII ADVKAEGEGN ASVTVLPAHD NVIRVITESE DHVTRKTFTI 

      1330       1340       1350       1360       1370       1380 
NLGTEQEFPA DSDERDYPAA DMTVTVGSEQ TSGTATEGPK KFAVDGNTST YWHSNWTPTT 

      1390       1400       1410       1420       1430       1440 
VNDLWIAFEL QKPTKLDALR YLPRPAGSKN GSVTEYKVQV SDDGTNWTDA GSGTWTTDYG 

      1450       1460       1470       1480       1490       1500 
WKLAEFNQPV TTKHVRLKAV HTYADSGNDK FMSASEIRLR KAVDTTDISG ATVTVPAKLT 

      1510       1520       1530       1540       1550       1560 
VDRVDADHPA TFATKDVTVT LGDATLRYGV DYLLDYAGNT AVGKATVTVR GIDKYSGTVA 

      1570       1580       1590       1600       1610       1620 
KTFTIELKNA PAPEPTLTSV SVKTKPSKLT YVVGDAFDPA GLVLQLNYDD DSTGTVTWNT 

      1630       1640       1650       1660       1670       1680 
QTAGDFTFKP ALDAKLKVTD KTVTVTYQGK SAVIDITVSQ PAPTVSKTDL DKAIKAIEAK 

      1690       1700       1710       1720       1730       1740 
NPDSSKYTAD SWKTFADAMA HAKAIIADDS ATQQDVDNAL KALTDAYAGL TEKTPEPAPV 

      1750       1760       1770       1780       1790       1800 
SKSELDKKIK AIEAEKLDGS KYTAESWKAF ETALAHAKAV IASDSATQQD VDAALGALTS 

      1810       1820       1830       1840       1850       1860 
ARDGLTEKGE VKPDPKPEPG TVDKAALDKA VKKVEAEKLD GSKYTAESWK AFETALAHAK 

      1870       1880       1890       1900       1910       1920 
AVIGNANSTQ FDIDNALSML NDARAALKEK PGRIIAIIDG SALSKTGASV ASIASVAAAM 

      1930 
LAVGAGVMAL RRKRF 

« Hide

References

[1]"Complete genome sequence of Bifidobacterium bifidum S17."
Zhurina D., Zomer A., Gleinser M., Brancaccio V.F., Auchter M., Waidmann M.S., Westermann C., van Sinderen D., Riedel C.U.
J. Bacteriol. 193:301-302(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: S17 EMBL ADO52712.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002220 Genomic DNA. Translation: ADO52712.1.
RefSeqYP_003938286.1. NC_014616.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADO52712; ADO52712; BBIF_0507.
GeneID9846715.
KEGGbbi:BBIF_0507.
PATRIC42478433. VBIBifBif172477_0519.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000158372.
KOK01190.
OMAFYQSQWN.

Enzyme and pathway databases

BioCycBBIF883062:GH1R-526-MONOMER.

Family and domain databases

Gene3D2.60.120.260. 3 hits.
2.60.40.320. 1 hit.
2.60.40.920. 1 hit.
3.20.20.80. 1 hit.
InterProIPR003344. Big_1.
IPR011081. Big_4.
IPR000421. Coagulation_fac_5/8-C_type_dom.
IPR011490. Extracell_matric-bd_Ebh.
IPR008979. Galactose-bd-like.
IPR006101. Glyco_hydro_2.
IPR013812. Glyco_hydro_2/20_Ig-like.
IPR006102. Glyco_hydro_2_Ig-like.
IPR006104. Glyco_hydro_2_N.
IPR006103. Glyco_hydro_2_TIM.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR008964. Invasin/intimin_cell_adhesion.
[Graphical view]
PfamPF07532. Big_4. 2 hits.
PF00754. F5_F8_type_C. 2 hits.
PF07554. FIVAR. 3 hits.
PF00703. Glyco_hydro_2. 1 hit.
PF02836. Glyco_hydro_2_C. 1 hit.
PF02837. Glyco_hydro_2_N. 1 hit.
[Graphical view]
PRINTSPR00132. GLHYDRLASE2.
SUPFAMSSF49303. SSF49303. 1 hit.
SSF49373. SSF49373. 1 hit.
SSF49785. SSF49785. 3 hits.
SSF51445. SSF51445. 1 hit.
PROSITEPS50022. FA58C_3. 2 hits.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE3EMP5_BIFBS
AccessionPrimary (citable) accession number: E3EMP5
Entry history
Integrated into UniProtKB/TrEMBL: January 11, 2011
Last sequence update: January 11, 2011
Last modified: May 14, 2014
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)