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E3EM68 (E3EM68_BIFBS) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 20. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:BBIF_0870 EMBL ADO53075.1
OrganismBifidobacterium bifidum (strain S17) [Complete proteome] [HAMAP] EMBL ADO53075.1
Taxonomic identifier883062 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeBifidobacterialesBifidobacteriaceaeBifidobacterium

Protein attributes

Sequence length522 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
E3EM68 [UniParc].

Last modified January 11, 2011. Version 1.
Checksum: 9BAED0F1370A422F

FASTA52258,134
        10         20         30         40         50         60 
MESFATRLRT AMNARHLRQV DIVRAAQASG VKLGKSHISQ YVSGKTTPRA DTLRFLADTL 

        70         80         90        100        110        120 
QVDEQWLLGH DRGRPGMPAQ PKRVPDNPGG RADAPRTPSS QAPAPQTTSP SHELEGTPMR 

       130        140        150        160        170        180 
HFNKSTKLDN VLYDVRGPVV DEAARMEQSG MHVLKLNIGN PAPFGFRTPD EVVYDMSRQL 

       190        200        210        220        230        240 
SDTEGYSASK GLFSARKAIM QYAQLKNLPN VGIEDIYTGN GVSELINLSL SALLDNGDEV 

       250        260        270        280        290        300 
LVPSPDYPLW TACVNLAGGT AVHYVCDEES EWYPDIDDMR SKITDRTVAI VLINPNNPTG 

       310        320        330        340        350        360 
ALYPKEVLQQ IVDLAREHQL MIFSDEIYDR LVMDGLHHVS IASMAPDLFC VTFSGLSKSH 

       370        380        390        400        410        420 
MIAGYRIGWM VLSGNKSIAK DYIEGINMLT NMRICSNVPA QSIVQTALGG HQSVNDYIVP 

       430        440        450        460        470        480 
GGRLYEQREY IYNALNSIPG VTAVKPKAAF YIFPKLDVKK FNITDDEQFA LDLLHDKRIL 

       490        500        510        520 
ITRGGGFNWH EPDHFRIVYL PRIEVLKDAT EKLTDFLSCY RQ 

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References

[1]"Complete genome sequence of Bifidobacterium bifidum S17."
Zhurina D., Zomer A., Gleinser M., Brancaccio V.F., Auchter M., Waidmann M.S., Westermann C., van Sinderen D., Riedel C.U.
J. Bacteriol. 193:301-302(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: S17 EMBL ADO53075.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002220 Genomic DNA. Translation: ADO53075.1.
RefSeqYP_003938649.1. NC_014616.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADO53075; ADO53075; BBIF_0870.
GeneID9847083.
KEGGbbi:BBIF_0870.
PATRIC42479199. VBIBifBif172477_0897.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000223042.
KOK14260.
OMARIVFLPH.

Enzyme and pathway databases

BioCycBBIF883062:GH1R-894-MONOMER.

Family and domain databases

Gene3D1.10.260.40. 1 hit.
3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR004839. Aminotransferase_I/II.
IPR001387. Cro/C1-type_HTH.
IPR010982. Lambda_DNA-bd_dom.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamPF00155. Aminotran_1_2. 1 hit.
[Graphical view]
SMARTSM00530. HTH_XRE. 1 hit.
[Graphical view]
SUPFAMSSF47413. SSF47413. 1 hit.
SSF53383. SSF53383. 1 hit.
PROSITEPS50943. HTH_CROC1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE3EM68_BIFBS
AccessionPrimary (citable) accession number: E3EM68
Entry history
Integrated into UniProtKB/TrEMBL: January 11, 2011
Last sequence update: January 11, 2011
Last modified: October 16, 2013
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)