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Protein
Submitted name:

Alpha-amylase

Gene

amyL

Organism
Paenibacillus polymyxa (strain SC2) (Bacillus polymyxa)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi104Calcium 1UniRule annotation1
Metal bindingi196Calcium 1UniRule annotation1
Metal bindingi204Calcium 2UniRule annotation1
Active sitei233NucleophileUniRule annotation1
Metal bindingi237Calcium 1; via carbonyl oxygenUniRule annotation1
Active sitei263Proton donorUniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandCalciumUniRule annotation, Metal-bindingUniRule annotation

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha-amylaseImported
Gene namesi
Name:amyLImported
ORF Names:PPSC2_24270Imported
OrganismiPaenibacillus polymyxa (strain SC2) (Bacillus polymyxa)Imported
Taxonomic identifieri886882 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesPaenibacillaceaePaenibacillus
Proteomesi
  • UP000006868 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi886882.PPSC2_c5179.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini5 – 391AamyInterPro annotationAdd BLAST387

Phylogenomic databases

eggNOGiENOG4105E5K. Bacteria.
COG0366. LUCA.
HOGENOMiHOG000094847.
KOiK01176.
OMAiFFHWYYP.
OrthoDBiPOG091H0HQ3.

Family and domain databases

InterProiView protein in InterPro
IPR013776. A-amylase_thermo.
IPR006047. Glyco_hydro_13_cat_dom.
IPR017853. Glycoside_hydrolase_SF.
PfamiView protein in Pfam
PF00128. Alpha-amylase. 1 hit.
PIRSFiPIRSF001021. Alph-amls_thrmst. 1 hit.
SMARTiView protein in SMART
SM00642. Aamy. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

E3EBZ3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKRNHTMMQF FEWNVKADGS HWKKLARLAP ELKAKGIDAI WIPPVTKGQS
60 70 80 90 100
PEDTGYGVYD LYDLGEFDQK GAVRTKYGTR EDLLEAVASC VRHGVAVYVD
110 120 130 140 150
LVMNHKAGAD ETEVFKVVEV NPDNRNEVIS EPFDIEGWTK FTFPGRQGKY
160 170 180 190 200
STFQWNFEHF NGTDYDASQD RTGIYRILGK NKNWSDNVDD EFGNYDYLMF
210 220 230 240 250
ANIDYNHQDV RKEMIRWGKW LVDTLQCNGF RLDAIKHINH EFVREFATEM
260 270 280 290 300
IKKRGQDFYM VGEFWKPDLE SCQKFLDTID YKIDLFDVSL HYKLHSASLG
310 320 330 340 350
GKDFDLSTIF EDTLVHTHPL NSVTFVDNHD SQPHEALESW VEDWFKPSAY
360 370 380 390 400
ALILLRKDGY PCVFYGDYYG IQGQTPVEGK QAELDPLLYA RYHKAYGEQK
410 420 430 440 450
DYFDDPHTIG WVRQGIPELH GSGCAVVITN ANDGEKRMFV GKQRAGEKWT
460 470 480 490
DLTGHHDHTI KIEQDGYGIF PVRAGSVSVW ALPTEEDSLD AEDTASA
Length:497
Mass (Da):57,151
Last modified:January 11, 2011 - v1
Checksum:i89B4CDF2DB1A97FA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002213 Genomic DNA. Translation: ADO59117.1.
RefSeqiWP_013373652.1. NC_014622.2.

Genome annotation databases

EnsemblBacteriaiADO59117; ADO59117; PPSC2_24270.
GeneIDi25389466.
KEGGippm:PPSC2_24270.
PATRICi42513466. VBIPaePol172748_4956.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002213 Genomic DNA. Translation: ADO59117.1.
RefSeqiWP_013373652.1. NC_014622.2.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi886882.PPSC2_c5179.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADO59117; ADO59117; PPSC2_24270.
GeneIDi25389466.
KEGGippm:PPSC2_24270.
PATRICi42513466. VBIPaePol172748_4956.

Phylogenomic databases

eggNOGiENOG4105E5K. Bacteria.
COG0366. LUCA.
HOGENOMiHOG000094847.
KOiK01176.
OMAiFFHWYYP.
OrthoDBiPOG091H0HQ3.

Family and domain databases

InterProiView protein in InterPro
IPR013776. A-amylase_thermo.
IPR006047. Glyco_hydro_13_cat_dom.
IPR017853. Glycoside_hydrolase_SF.
PfamiView protein in Pfam
PF00128. Alpha-amylase. 1 hit.
PIRSFiPIRSF001021. Alph-amls_thrmst. 1 hit.
SMARTiView protein in SMART
SM00642. Aamy. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiE3EBZ3_PAEPS
AccessioniPrimary (citable) accession number: E3EBZ3
Entry historyiIntegrated into UniProtKB/TrEMBL: January 11, 2011
Last sequence update: January 11, 2011
Last modified: May 10, 2017
This is version 41 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.