E3E929 (E3E929_PAEPS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
AraC/XylS family transcriptional regulator EMBL ADO59236.1

Gene names

Ordered Locus Names:

PPSC2_c5299 EMBL ADO59236.1

Organism

Paenibacillus polymyxa (strain SC2) (Bacillus polymyxa) [Complete proteome] [HAMAP]

Taxonomic identifier

886882 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Bacilli › Bacillales › Paenibacillaceae › Paenibacillus › Paenibacillus polymyxa

Protein attributes

Sequence length	289 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 HTH araC/xylS-type DNA-binding domain. SAAS SAAS018062

Ontologies

Keywords
Ligand	DNA-binding SAAS SAAS020449
Technical term	Complete proteome
Gene Ontology (GO)
Cellular_component	intracellular Inferred from electronic annotation. Source: InterPro
Molecular_function	sequence-specific DNA binding Inferred from electronic annotation. Source: InterPro sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	E3E929 [UniParc]. Last modified January 11, 2011. Version 1. Checksum: 2C7D5DAE36E42314	FASTA	289	32,791
	10 20 30 40 50 60 MWLEWLLRIK NALDLMEERM QQPLDIDEIA KAAYSSPFHF QRMFYMLTGV TVAEYVRKRR 70 80 90 100 110 120 LTLAAQELSL STTKVLDVAF KYGYDSPESF SKAFRKVHGI SPSEARNPGV NLKAFPRITF 130 140 150 160 170 180 HLSLKGDQEM DYKIVEKAAF TVIGKSIQVT TKNGENLREI PKFWDQLNAD GTSDRIHALG 190 200 210 220 230 240 TGDDILGICL DMKHGEETFS YLIAAEGSED VAASNGLEAR TIPAATWAVF TSIGPMPHSI 250 260 270 280 QKVWQRIYQE WFPASNYEHS GGPELEVYTM GDTHAEEYRS EVWIPITKK

References

[1]

"Complete genome sequence of Paenibacillus polymyxa SC2, a strain of plant growth-promoting Rhizobacterium with broad-spectrum antimicrobial activity." Ma M., Wang C., Ding Y., Li L., Shen D., Jiang X., Guan D., Cao F., Chen H., Feng R., Wang X., Ge Y., Yao L., Bing X., Yang X., Li J., Du B. J. Bacteriol. 193:311-312(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: SC2.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002213 Genomic DNA. Translation: ADO59236.1.
RefSeq	YP_003949477.1. NC_014622.1.
3D structure databases
ModBase	Search...
Protein family/group databases
AraC-XylS	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADO59236; ADO59236; PPSC2_c5299.
GeneID	9853573.
KEGG	ppm:PPSC2_c5299.
PATRIC	42513688. VBIPaePol172748_5067.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000085330.
KO	K13653.
OMA	DNYNPSI.
Enzyme and pathway databases
BioCyc	PPOL886882:GBY1-5449-MONOMER.
Family and domain databases
Gene3D	1.10.10.60. 2 hits.
InterPro	IPR010499. AraC_E-bd. IPR009057. Homeodomain-like. IPR018060. HTH_AraC. IPR018062. HTH_AraC-typ_CS. IPR011256. Reg_factor_effector_bac. IPR020449. Tscrpt_reg_HTH_AraC-type. [Graphical view]
Pfam	PF06445. GyrI-like. 1 hit. PF12833. HTH_18. 1 hit. [Graphical view]
PRINTS	PR00032. HTHARAC.
SMART	SM00871. AraC_E_bind. 1 hit. SM00342. HTH_ARAC. 1 hit. [Graphical view]
SUPFAM	SSF55136. Bac_reg_effector. 1 hit. SSF46689. Homeodomain_like. 2 hits.
PROSITE	PS00041. HTH_ARAC_FAMILY_1. 1 hit. PS01124. HTH_ARAC_FAMILY_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

E3E929_PAEPS

Accession

Primary (citable) accession number: E3E929

Entry history

Integrated into UniProtKB/TrEMBL:	January 11, 2011
Last sequence update:	January 11, 2011
Last modified:	May 29, 2013
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)