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E3E6W9

- E3E6W9_PAEPS

UniProt

E3E6W9 - E3E6W9_PAEPS

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Protein

Xylose isomerase

Gene
xylA, PPSC2_c4572
Organism
Paenibacillus polymyxa (strain SC2) (Bacillus polymyxa)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

D-xylopyranose = D-xylulose.UniRule annotationSAAS annotations

Cofactori

Binds 2 magnesium ions per subunit By similarity.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei99 – 991 By similarityUniRule annotation
Active sitei102 – 1021 By similarityUniRule annotation
Metal bindingi230 – 2301Magnesium 1 By similarityUniRule annotation
Metal bindingi266 – 2661Magnesium 1 By similarityUniRule annotation
Metal bindingi266 – 2661Magnesium 2 By similarityUniRule annotation
Metal bindingi269 – 2691Magnesium 2 By similarityUniRule annotation
Metal bindingi294 – 2941Magnesium 1 By similarityUniRule annotation
Metal bindingi305 – 3051Magnesium 2 By similarityUniRule annotation
Metal bindingi307 – 3071Magnesium 2 By similarityUniRule annotation
Metal bindingi337 – 3371Magnesium 1 By similarityUniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: UniProtKB-HAMAP
  2. xylose isomerase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. D-xylose metabolic process Source: UniProtKB-HAMAP
  2. pentose-phosphate shunt Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotationSAAS annotationsImported

Keywords - Biological processi

Carbohydrate metabolism, Pentose shuntUniRule annotationSAAS annotations, Xylose metabolismUniRule annotationSAAS annotations

Keywords - Ligandi

MagnesiumUniRule annotationSAAS annotations, Metal-bindingUniRule annotationSAAS annotations

Enzyme and pathway databases

BioCyciPPOL886882:GBY1-4702-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Xylose isomeraseUniRule annotation (EC:5.3.1.5UniRule annotation)
Gene namesi
Name:xylAUniRule annotation
Ordered Locus Names:PPSC2_c4572Imported
OrganismiPaenibacillus polymyxa (strain SC2) (Bacillus polymyxa)Imported
Taxonomic identifieri886882 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesPaenibacillaceaePaenibacillus
ProteomesiUP000006868: Chromosome

Subcellular locationi

Cytoplasm By similarity UniRule annotationSAAS annotations

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotations

Interactioni

Subunit structurei

Homotetramer By similarity.UniRule annotationSAAS annotations

Structurei

3D structure databases

ProteinModelPortaliE3E6W9.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

HOGENOMiHOG000252293.
KOiK01805.
OMAiCMDATHK.

Family and domain databases

Gene3Di3.20.20.150. 1 hit.
HAMAPiMF_00455. Xylose_isom_A.
InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamiPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSiPR00688. XYLOSISMRASE.
SUPFAMiSSF51658. SSF51658. 1 hit.
TIGRFAMsiTIGR02630. xylose_isom_A. 1 hit.
PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E3E6W9-1 [UniParc]FASTAAdd to Basket

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MAYFEQVSKI NFEGKQSDNP FAFKFYNPQE IVAGKTMEEH LRFSMAYWHT    50
LVAGGSDPFG VETAERPWSK FTGLDLAKAR VEAAFELLDK LNLPYFAFHD 100
VDIAPEGASL KEFYSNLDTI VDLIEEHMKA TGKKLLWNTA NMFSHPRYLH 150
GAATTCNADV YAHAAAQIKK GLEVGKRLGA DNYVFWGGRE GYETLLNTDL 200
KLEQDNLGRM FHMAVDYARE IGFDAQFLIE PKPKEPTKHQ YDFDAATTIA 250
FLQKYDLDQH FKLNLEANHA TLAGHTFDHE VRVARVNGML GSLDANQGDL 300
LLGWDTDEFP VDLYDATLTM YEVLQNEGLG RGGINFDAKV RRASFEPEDL 350
FLAHIAGMDT YAKGLKVAAK LIEDRVFEDF IEKRYSSFKE GIGADIVSGK 400
ATLASLAEYA LANEAPRKNV SGRQEYLKAT LNQYILAD 438
Length:438
Mass (Da):49,240
Last modified:January 11, 2011 - v1
Checksum:i2B8FAF868E80914C
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002213 Genomic DNA. Translation: ADO58521.1.
RefSeqiWP_013373089.1. NC_014622.1.
YP_003948762.1. NC_014622.1.

Genome annotation databases

EnsemblBacteriaiADO58521; ADO58521; PPSC2_c4572.
GeneIDi9852860.
KEGGippm:PPSC2_c4572.
PATRICi42512252. VBIPaePol172748_4367.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002213 Genomic DNA. Translation: ADO58521.1 .
RefSeqi WP_013373089.1. NC_014622.1.
YP_003948762.1. NC_014622.1.

3D structure databases

ProteinModelPortali E3E6W9.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADO58521 ; ADO58521 ; PPSC2_c4572 .
GeneIDi 9852860.
KEGGi ppm:PPSC2_c4572.
PATRICi 42512252. VBIPaePol172748_4367.

Phylogenomic databases

HOGENOMi HOG000252293.
KOi K01805.
OMAi CMDATHK.

Enzyme and pathway databases

BioCyci PPOL886882:GBY1-4702-MONOMER.

Family and domain databases

Gene3Di 3.20.20.150. 1 hit.
HAMAPi MF_00455. Xylose_isom_A.
InterProi IPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view ]
Pfami PF01261. AP_endonuc_2. 1 hit.
[Graphical view ]
PRINTSi PR00688. XYLOSISMRASE.
SUPFAMi SSF51658. SSF51658. 1 hit.
TIGRFAMsi TIGR02630. xylose_isom_A. 1 hit.
PROSITEi PS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of Paenibacillus polymyxa SC2, a strain of plant growth-promoting Rhizobacterium with broad-spectrum antimicrobial activity."
    Ma M., Wang C., Ding Y., Li L., Shen D., Jiang X., Guan D., Cao F., Chen H., Feng R., Wang X., Ge Y., Yao L., Bing X., Yang X., Li J., Du B.
    J. Bacteriol. 193:311-312(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SC2Imported.

Entry informationi

Entry nameiE3E6W9_PAEPS
AccessioniPrimary (citable) accession number: E3E6W9
Entry historyi
Integrated into UniProtKB/TrEMBL: January 11, 2011
Last sequence update: January 11, 2011
Last modified: September 3, 2014
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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