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E3E6W9

- E3E6W9_PAEPS

UniProt

E3E6W9 - E3E6W9_PAEPS

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Protein

Xylose isomerase

Gene

xylA

Organism
Paenibacillus polymyxa (strain SC2) (Bacillus polymyxa)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

D-xylopyranose = D-xylulose.UniRule annotationSAAS annotation

Cofactori

Note: Binds 2 magnesium ions per subunit.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei99 – 991UniRule annotation
Active sitei102 – 1021UniRule annotation
Metal bindingi230 – 2301Magnesium 1UniRule annotation
Metal bindingi266 – 2661Magnesium 1UniRule annotation
Metal bindingi266 – 2661Magnesium 2UniRule annotation
Metal bindingi269 – 2691Magnesium 2UniRule annotation
Metal bindingi294 – 2941Magnesium 1UniRule annotation
Metal bindingi305 – 3051Magnesium 2UniRule annotation
Metal bindingi307 – 3071Magnesium 2UniRule annotation
Metal bindingi337 – 3371Magnesium 1UniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: UniProtKB-HAMAP
  2. xylose isomerase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. D-xylose metabolic process Source: UniProtKB-HAMAP
  2. pentose-phosphate shunt Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotation

Keywords - Biological processi

Carbohydrate metabolism, Pentose shuntUniRule annotation, Xylose metabolismUniRule annotation

Keywords - Ligandi

MagnesiumUniRule annotationSAAS annotation, Metal-bindingUniRule annotation

Enzyme and pathway databases

BioCyciPPOL886882:GBY1-4702-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Xylose isomeraseUniRule annotation (EC:5.3.1.5UniRule annotation)
Gene namesi
Name:xylAUniRule annotation
Ordered Locus Names:PPSC2_c4572Imported
OrganismiPaenibacillus polymyxa (strain SC2) (Bacillus polymyxa)Imported
Taxonomic identifieri886882 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesPaenibacillaceaePaenibacillus
ProteomesiUP000006868: Chromosome

Subcellular locationi

Cytoplasm UniRule annotationSAAS annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotation

Interactioni

Subunit structurei

Homotetramer.UniRule annotationSAAS annotation

Structurei

3D structure databases

ProteinModelPortaliE3E6W9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the xylose isomerase family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000252293.
KOiK01805.
OMAiCMDATHK.

Family and domain databases

Gene3Di3.20.20.150. 1 hit.
HAMAPiMF_00455. Xylose_isom_A.
InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamiPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSiPR00688. XYLOSISMRASE.
SUPFAMiSSF51658. SSF51658. 1 hit.
TIGRFAMsiTIGR02630. xylose_isom_A. 1 hit.
PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E3E6W9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAYFEQVSKI NFEGKQSDNP FAFKFYNPQE IVAGKTMEEH LRFSMAYWHT
60 70 80 90 100
LVAGGSDPFG VETAERPWSK FTGLDLAKAR VEAAFELLDK LNLPYFAFHD
110 120 130 140 150
VDIAPEGASL KEFYSNLDTI VDLIEEHMKA TGKKLLWNTA NMFSHPRYLH
160 170 180 190 200
GAATTCNADV YAHAAAQIKK GLEVGKRLGA DNYVFWGGRE GYETLLNTDL
210 220 230 240 250
KLEQDNLGRM FHMAVDYARE IGFDAQFLIE PKPKEPTKHQ YDFDAATTIA
260 270 280 290 300
FLQKYDLDQH FKLNLEANHA TLAGHTFDHE VRVARVNGML GSLDANQGDL
310 320 330 340 350
LLGWDTDEFP VDLYDATLTM YEVLQNEGLG RGGINFDAKV RRASFEPEDL
360 370 380 390 400
FLAHIAGMDT YAKGLKVAAK LIEDRVFEDF IEKRYSSFKE GIGADIVSGK
410 420 430
ATLASLAEYA LANEAPRKNV SGRQEYLKAT LNQYILAD
Length:438
Mass (Da):49,240
Last modified:January 11, 2011 - v1
Checksum:i2B8FAF868E80914C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002213 Genomic DNA. Translation: ADO58521.1.
RefSeqiYP_003948762.1. NC_014622.1.

Genome annotation databases

EnsemblBacteriaiADO58521; ADO58521; PPSC2_c4572.
GeneIDi9852860.
KEGGippm:PPSC2_c4572.
PATRICi42512252. VBIPaePol172748_4367.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002213 Genomic DNA. Translation: ADO58521.1 .
RefSeqi YP_003948762.1. NC_014622.1.

3D structure databases

ProteinModelPortali E3E6W9.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADO58521 ; ADO58521 ; PPSC2_c4572 .
GeneIDi 9852860.
KEGGi ppm:PPSC2_c4572.
PATRICi 42512252. VBIPaePol172748_4367.

Phylogenomic databases

HOGENOMi HOG000252293.
KOi K01805.
OMAi CMDATHK.

Enzyme and pathway databases

BioCyci PPOL886882:GBY1-4702-MONOMER.

Family and domain databases

Gene3Di 3.20.20.150. 1 hit.
HAMAPi MF_00455. Xylose_isom_A.
InterProi IPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view ]
Pfami PF01261. AP_endonuc_2. 1 hit.
[Graphical view ]
PRINTSi PR00688. XYLOSISMRASE.
SUPFAMi SSF51658. SSF51658. 1 hit.
TIGRFAMsi TIGR02630. xylose_isom_A. 1 hit.
PROSITEi PS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of Paenibacillus polymyxa SC2, a strain of plant growth-promoting Rhizobacterium with broad-spectrum antimicrobial activity."
    Ma M., Wang C., Ding Y., Li L., Shen D., Jiang X., Guan D., Cao F., Chen H., Feng R., Wang X., Ge Y., Yao L., Bing X., Yang X., Li J., Du B.
    J. Bacteriol. 193:311-312(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SC2Imported.

Entry informationi

Entry nameiE3E6W9_PAEPS
AccessioniPrimary (citable) accession number: E3E6W9
Entry historyi
Integrated into UniProtKB/TrEMBL: January 11, 2011
Last sequence update: January 11, 2011
Last modified: November 26, 2014
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3