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E3E6L0 (E3E6L0_PAEPS) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 23. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:PPSC2_c4320 EMBL ADO58270.1
OrganismPaenibacillus polymyxa (strain SC2) (Bacillus polymyxa) [Complete proteome] [HAMAP] EMBL ADO58270.1
Taxonomic identifier886882 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliBacillalesPaenibacillaceaePaenibacillus

Protein attributes

Sequence length592 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Metal binding3411Calcium 1 PDB 4B52
Metal binding3431Calcium 1 PDB 4B52
Metal binding3451Calcium 1; via carbonyl oxygen PDB 4B52
Metal binding4171Calcium 2 PDB 4B52
Metal binding4191Calcium 2 PDB 4B52
Metal binding4231Zinc; via tele nitrogen PDB 4B52
Metal binding4271Zinc; via tele nitrogen PDB 4B52
Metal binding4471Zinc PDB 4B52
Metal binding4581Calcium 2 PDB 4B52
Metal binding4661Calcium 2 PDB 4B52
Metal binding4691Calcium 3; via carbonyl oxygen PDB 4B52
Metal binding4701Calcium 3 PDB 4B52
Metal binding4731Calcium 3; via carbonyl oxygen PDB 4B52
Metal binding4761Calcium 3 PDB 4B52

Sequences

Sequence LengthMass (Da)Tools
E3E6L0 [UniParc].

Last modified January 11, 2011. Version 1.
Checksum: 27B96B6EA81B604F

FASTA59263,603
        10         20         30         40         50         60 
MKKVWVSLLG GAMLLGSVAS GASAESSVSG PAQLTPTFHA EQWKAPTSVS GDDIVWSYLN 

        70         80         90        100        110        120 
RQKKSLLGVD SSSVREQFRI VDRTSDKSGV SHYRLKQYVN GIPVYGAEQT IHVGKSGEVT 

       130        140        150        160        170        180 
SYLGAVVNED QQAEATQGTT PKISASEAVY TAYKEAAARI EALPTSDDTI SKDAEEPSSV 

       190        200        210        220        230        240 
SKDTYAEAAN NEKTLSVDKD ELSLDQASVL KDSKIEAVEP EKSSIAKIAN LQPEVDPKAE 

       250        260        270        280        290        300 
LYYYPKGDDL LLVYVTEVNV LEPAPLRTRY IIDANDGSIV FQYDIINEAT GTGKGVLGDS 

       310        320        330        340        350        360 
KSFTTTASGS SYQLKDTTRG NGIVTYTASN RQSIPGTILT DADNVWNDPA GVDAHAYAAK 

       370        380        390        400        410        420 
TYDYYKAKFG RNSIDGRGLQ LRSTVHYGSR YNNAFWNGSQ MTYGDGDGST FIAFSGDPDV 

       430        440        450        460        470        480 
VGHELTHGVT EYTSNLEYYG ESGALNEAFS DVIGNDIQRK NWLVGDDIYT PNIAGDALRS 

       490        500        510        520        530        540 
MSNPTLYDQP DHYSNLYRGS SDNGGVHTNS GIINKAYYLL AQGGNFHGVT VNGIGRDAAV 

       550        560        570        580        590 
QIYYSAFTNY LTSSSDFSNA RAAVIQAAKD LYGANSAEAT AAAKSFDAVG VN 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of Paenibacillus polymyxa SC2, a strain of plant growth-promoting Rhizobacterium with broad-spectrum antimicrobial activity."
Ma M., Wang C., Ding Y., Li L., Shen D., Jiang X., Guan D., Cao F., Chen H., Feng R., Wang X., Ge Y., Yao L., Bing X., Yang X., Li J., Du B.
J. Bacteriol. 193:311-312(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: SC2 EMBL ADO58270.1.
[2]"Structure of gentlyase, the neutral metalloprotease of Paenibacillus polymyxa."
Ruf A., Stihle M., Benz J., Schmidt M., Sobek H.
Acta Crystallogr. D 69:24-31(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (1.76 ANGSTROMS) OF 289-592 IN COMPLEX WITH CALCIUM AND ZINC.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002213 Genomic DNA. Translation: ADO58270.1.
RefSeqYP_003948511.1. NC_014622.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4B52X-ray1.76A/B289-592[»]
ModBaseSearch...
MobiDBSearch...

Protein family/group databases

MEROPSM04.001.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADO58270; ADO58270; PPSC2_c4320.
GeneID9852609.
KEGGppm:PPSC2_c4320.
PATRIC42511738. VBIPaePol172748_4127.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000247250.
OMAPLRTRYI.

Enzyme and pathway databases

BioCycPPOL886882:GBY1-4433-MONOMER.

Family and domain databases

Gene3D3.10.170.10. 1 hit.
InterProIPR011096. FTP_domain.
IPR023612. Peptidase_M4.
IPR001570. Peptidase_M4_C_domain.
IPR013856. Peptidase_M4_domain.
[Graphical view]
PfamPF07504. FTP. 1 hit.
PF01447. Peptidase_M4. 1 hit.
PF02868. Peptidase_M4_C. 1 hit.
[Graphical view]
PRINTSPR00730. THERMOLYSIN.
ProtoNetSearch...

Entry information

Entry nameE3E6L0_PAEPS
AccessionPrimary (citable) accession number: E3E6L0
Entry history
Integrated into UniProtKB/TrEMBL: January 11, 2011
Last sequence update: January 11, 2011
Last modified: February 19, 2014
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)