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E3DA55

- E3DA55_GARV3

UniProt

E3DA55 - E3DA55_GARV3

Protein

Protein RecA

Gene

recA

Organism
Gardnerella vaginalis (strain ATCC 14019 / 317)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 27 (01 Oct 2014)
      Sequence version 1 (11 Jan 2011)
      Previous versions | rss
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    Functioni

    Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage.UniRule annotationSAAS annotation

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi83 – 908ATPUniRule annotation

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-HAMAP
    2. damaged DNA binding Source: UniProtKB-HAMAP
    3. DNA-dependent ATPase activity Source: UniProtKB-HAMAP
    4. single-stranded DNA binding Source: UniProtKB-HAMAP

    GO - Biological processi

    1. DNA recombination Source: UniProtKB-HAMAP
    2. DNA repair Source: UniProtKB-HAMAP
    3. SOS response Source: UniProtKB-HAMAP

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotationSAAS annotation, DNA repair, SOS responseUniRule annotationSAAS annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotationSAAS annotation, DNA-bindingUniRule annotationSAAS annotation, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciGVAG525284:GI3V-902-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Protein RecAUniRule annotation
    Alternative name(s):
    Recombinase AUniRule annotation
    Gene namesi
    Name:recAUniRule annotationImported
    Ordered Locus Names:HMPREF0421_20867Imported
    OrganismiGardnerella vaginalis (strain ATCC 14019 / 317)Imported
    Taxonomic identifieri525284 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeBifidobacterialesBifidobacteriaceaeGardnerella
    ProteomesiUP000001453: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotationSAAS annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmUniRule annotationSAAS annotation

    Structurei

    3D structure databases

    ProteinModelPortaliE3DA55.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the RecA family.UniRule annotation

    Phylogenomic databases

    HOGENOMiHOG000264120.
    KOiK03553.
    OrthoDBiEOG6ZKXNZ.

    Family and domain databases

    Gene3Di3.30.250.10. 1 hit.
    3.40.50.300. 1 hit.
    HAMAPiMF_00268. RecA.
    InterProiIPR003593. AAA+_ATPase.
    IPR013765. DNA_recomb/repair_RecA.
    IPR020584. DNA_recomb/repair_RecA_CS.
    IPR027417. P-loop_NTPase.
    IPR020588. RecA_ATP-bd.
    IPR023400. RecA_C.
    IPR020587. RecA_monomer-monomer_interface.
    [Graphical view]
    PANTHERiPTHR22942:SF1. PTHR22942:SF1. 1 hit.
    PfamiPF00154. RecA. 1 hit.
    [Graphical view]
    PRINTSiPR00142. RECA.
    SMARTiSM00382. AAA. 1 hit.
    [Graphical view]
    SUPFAMiSSF52540. SSF52540. 1 hit.
    SSF54752. SSF54752. 1 hit.
    TIGRFAMsiTIGR02012. tigrfam_recA. 1 hit.
    PROSITEiPS00321. RECA_1. 1 hit.
    PS50162. RECA_2. 1 hit.
    PS50163. RECA_3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    E3DA55-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAQQAKKGAV DRLIDADKAD PRRKAALETA LANVEKQYGK GSAMRLGDKP    50
    LQDVEVIPTG SIALDMALGI GGVPRGRIVE VYGPESSGKT TLALHIVANA 100
    QKNGGIAAFI DAEHALDPVY ARKLGVDTDS LIVSQPDNGE QALEIADMLI 150
    RSGALDVIVV DSVAALVPKA EIDGDMGDSH VGLQARLMSQ ALRKMTGALS 200
    QAGTTAIFIN QLREKIGVFF GNPETTTGGK ALKFYSSVRM DIRRVSTIKN 250
    GEEAVGNRTK VKIVKNKMAP PFKTAEFDVL YGEGISTEGS VIDMAVQCDV 300
    IKKSGSWFTY EGEQLGQGRE NVRQFLKDNP AITEEISDKV KVAFGLMKPE 350
    DQFVEVEDED DNSQSVSSSS ADSKTNTSKG SDVK 384
    Length:384
    Mass (Da):41,079
    Last modified:January 11, 2011 - v1
    Checksum:i7A32F4E51E18CA2F
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002104 Genomic DNA. Translation: ADP38949.1.
    RefSeqiYP_003985972.1. NC_014644.1.

    Genome annotation databases

    EnsemblBacteriaiADP38949; ADP38949; HMPREF0421_20867.
    GeneIDi9904435.
    KEGGigvg:HMPREF0421_20867.
    PATRICi42628613. VBIGarVag39333_0856.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002104 Genomic DNA. Translation: ADP38949.1 .
    RefSeqi YP_003985972.1. NC_014644.1.

    3D structure databases

    ProteinModelPortali E3DA55.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADP38949 ; ADP38949 ; HMPREF0421_20867 .
    GeneIDi 9904435.
    KEGGi gvg:HMPREF0421_20867.
    PATRICi 42628613. VBIGarVag39333_0856.

    Phylogenomic databases

    HOGENOMi HOG000264120.
    KOi K03553.
    OrthoDBi EOG6ZKXNZ.

    Enzyme and pathway databases

    BioCyci GVAG525284:GI3V-902-MONOMER.

    Family and domain databases

    Gene3Di 3.30.250.10. 1 hit.
    3.40.50.300. 1 hit.
    HAMAPi MF_00268. RecA.
    InterProi IPR003593. AAA+_ATPase.
    IPR013765. DNA_recomb/repair_RecA.
    IPR020584. DNA_recomb/repair_RecA_CS.
    IPR027417. P-loop_NTPase.
    IPR020588. RecA_ATP-bd.
    IPR023400. RecA_C.
    IPR020587. RecA_monomer-monomer_interface.
    [Graphical view ]
    PANTHERi PTHR22942:SF1. PTHR22942:SF1. 1 hit.
    Pfami PF00154. RecA. 1 hit.
    [Graphical view ]
    PRINTSi PR00142. RECA.
    SMARTi SM00382. AAA. 1 hit.
    [Graphical view ]
    SUPFAMi SSF52540. SSF52540. 1 hit.
    SSF54752. SSF54752. 1 hit.
    TIGRFAMsi TIGR02012. tigrfam_recA. 1 hit.
    PROSITEi PS00321. RECA_1. 1 hit.
    PS50162. RECA_2. 1 hit.
    PS50163. RECA_3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Comparative genomics of Gardnerella vaginalis strains reveals substantial differences in metabolic and virulence potential."
      Yeoman C.J., Yildirim S., Thomas S.M., Durkin A.S., Torralba M., Sutton G., Buhay C.J., Ding Y., Dugan-Rocha S.P., Muzny D.M., Qin X., Gibbs R.A., Leigh S.R., Stumpf R., White B.A., Highlander S.K., Nelson K.E., Wilson B.A.
      PLoS ONE 5:E12411-E12411(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 14019 / 317Imported.

    Entry informationi

    Entry nameiE3DA55_GARV3
    AccessioniPrimary (citable) accession number: E3DA55
    Entry historyi
    Integrated into UniProtKB/TrEMBL: January 11, 2011
    Last sequence update: January 11, 2011
    Last modified: October 1, 2014
    This is version 27 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3