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E3DA55 (E3DA55_GARV3) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Protein RecA RuleBase RU000526 HAMAP-Rule MF_00268
Alternative name(s):
Recombinase A HAMAP-Rule MF_00268
Gene names
Name:recA HAMAP-Rule MF_00268 EMBL ADP38949.1
Ordered Locus Names:HMPREF0421_20867 EMBL ADP38949.1
OrganismGardnerella vaginalis (strain ATCC 14019 / 317) [Complete proteome] [HAMAP] EMBL ADP38949.1
Taxonomic identifier525284 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeBifidobacterialesBifidobacteriaceaeGardnerella

Protein attributes

Sequence length384 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage By similarity. RuleBase RU000526 HAMAP-Rule MF_00268 SAAS SAAS013765

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00268 SAAS SAAS013765.

Sequence similarities

Belongs to the RecA family. HAMAP-Rule MF_00268

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding83 – 908ATP By similarity HAMAP-Rule MF_00268

Sequences

Sequence LengthMass (Da)Tools
E3DA55 [UniParc].

Last modified January 11, 2011. Version 1.
Checksum: 7A32F4E51E18CA2F

FASTA38441,079
        10         20         30         40         50         60 
MAQQAKKGAV DRLIDADKAD PRRKAALETA LANVEKQYGK GSAMRLGDKP LQDVEVIPTG 

        70         80         90        100        110        120 
SIALDMALGI GGVPRGRIVE VYGPESSGKT TLALHIVANA QKNGGIAAFI DAEHALDPVY 

       130        140        150        160        170        180 
ARKLGVDTDS LIVSQPDNGE QALEIADMLI RSGALDVIVV DSVAALVPKA EIDGDMGDSH 

       190        200        210        220        230        240 
VGLQARLMSQ ALRKMTGALS QAGTTAIFIN QLREKIGVFF GNPETTTGGK ALKFYSSVRM 

       250        260        270        280        290        300 
DIRRVSTIKN GEEAVGNRTK VKIVKNKMAP PFKTAEFDVL YGEGISTEGS VIDMAVQCDV 

       310        320        330        340        350        360 
IKKSGSWFTY EGEQLGQGRE NVRQFLKDNP AITEEISDKV KVAFGLMKPE DQFVEVEDED 

       370        380 
DNSQSVSSSS ADSKTNTSKG SDVK 

« Hide

References

[1]"Comparative genomics of Gardnerella vaginalis strains reveals substantial differences in metabolic and virulence potential."
Yeoman C.J., Yildirim S., Thomas S.M., Durkin A.S., Torralba M., Sutton G., Buhay C.J., Ding Y., Dugan-Rocha S.P., Muzny D.M., Qin X., Gibbs R.A., Leigh S.R., Stumpf R., White B.A., Highlander S.K., Nelson K.E., Wilson B.A.
PLoS ONE 5:E12411-E12411(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 14019 / 317.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002104 Genomic DNA. Translation: ADP38949.1.
RefSeqYP_003985972.1. NC_014644.1.

3D structure databases

ProteinModelPortalE3DA55.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADP38949; ADP38949; HMPREF0421_20867.
GeneID9904435.
KEGGgvg:HMPREF0421_20867.
PATRIC42628613. VBIGarVag39333_0856.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000264120.
KOK03553.
OrthoDBEOG6ZKXNZ.

Enzyme and pathway databases

BioCycGVAG525284:GI3V-902-MONOMER.

Family and domain databases

Gene3D3.30.250.10. 1 hit.
3.40.50.300. 1 hit.
HAMAPMF_00268. RecA.
InterProIPR003593. AAA+_ATPase.
IPR013765. DNA_recomb/repair_RecA.
IPR020584. DNA_recomb/repair_RecA_CS.
IPR027417. P-loop_NTPase.
IPR020588. RecA_ATP-bd.
IPR023400. RecA_C.
IPR020587. RecA_monomer-monomer_interface.
[Graphical view]
PANTHERPTHR22942:SF1. PTHR22942:SF1. 1 hit.
PfamPF00154. RecA. 1 hit.
[Graphical view]
PRINTSPR00142. RECA.
SMARTSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMSSF52540. SSF52540. 1 hit.
SSF54752. SSF54752. 1 hit.
TIGRFAMsTIGR02012. tigrfam_recA. 1 hit.
PROSITEPS00321. RECA_1. 1 hit.
PS50162. RECA_2. 1 hit.
PS50163. RECA_3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE3DA55_GARV3
AccessionPrimary (citable) accession number: E3DA55
Entry history
Integrated into UniProtKB/TrEMBL: January 11, 2011
Last sequence update: January 11, 2011
Last modified: June 11, 2014
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)