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E3D837 (E3D837_GARV3) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 22. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:HMPREF0421_20186 EMBL ADP38272.1
OrganismGardnerella vaginalis (strain ATCC 14019 / 317) [Complete proteome] [HAMAP] EMBL ADP38272.1
Taxonomic identifier525284 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeBifidobacterialesBifidobacteriaceaeGardnerella

Protein attributes

Sequence length907 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Molecular_functionexo-alpha-sialidase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
E3D837 [UniParc].

Last modified January 11, 2011. Version 1.
Checksum: 60F7F5FAA1041E2A

FASTA90799,756
        10         20         30         40         50         60 
MERRSTKTTS LIEDIADIKG SEHTRFNHAT IKITPSSEIK KYSENESGIN RKDKNEEINQ 

        70         80         90        100        110        120 
NEGIIGFKFV ANSDCDLLDI KPAQKSEASA QQEHTTPIIK ISIKEDAPLL SAQNLLEDSA 

       130        140        150        160        170        180 
DANGAKEIAL QMEDALGACD GREHDFAITY GSFGSRFYLD GYQCFASATN LGPQRVSGKA 

       190        200        210        220        230        240 
AEVCAAQAES SQIYDFYYSS HLPNPEEIAN SATQAQPDIW FAGPTICARD IKRVSCNSSG 

       250        260        270        280        290        300 
TLHIQFRLRG PGQHGVLFAA GTVGTKTNLE SSEKISVYAG PEGIKITLID SETCIKSVIE 

       310        320        330        340        350        360 
AAASVDDGEW HDLIIRANRG AIDIYVDGYS ESHNIGQFWF ANIPELNAVS IGEDLRGVRL 

       370        380        390        400        410        420 
MGEARTGGIY FSALTEGQIQ RISRVKPLVT TALFDTGYAG SRSYRIPSLV KTRMGTLIAG 

       430        440        450        460        470        480 
ADQRTSVSND APNHINFVIR RSTDGGKTWK PLQTVINMPG KNLGKLGASA IDSCPILDPA 

       490        500        510        520        530        540 
GKSERINVLI DLNPSGIGLT NCKTDVGVDE CGRIKMEDRF GRHYAALMDG SAAVKLPCDS 

       550        560        570        580        590        600 
SEKECATKWL VFPDGSIKNC DSHNDLRNNS HSNQTCDSST WNIWKSQEIA SESQPLFAEK 

       610        620        630        640        650        660 
TCYIAQIYSD DDGKTWSATR LIDHMVKEPW MSFAGVCPGN GIVIRQSEKH YGRILVPFYC 

       670        680        690        700        710        720 
SGKSKSHYSS GALISDDDGK TWSRGKMINE GRLINGKIVD PATMQDDDAT SSETVFVERK 

       730        740        750        760        770        780 
NGDILAFFRN QNRSGCVGKA ISHDCGETWS ELIFDTSLPE IFSQPSATCF NSENADNADC 

       790        800        810        820        830        840 
IAFANASQMM PYRGRGVVRF SYDGGKTWAK SVCINPFHHV YQCLSSSNKR TLQLLWERET 

       850        860        870        880        890        900 
TGIYITAIDS NLWKQDNLQI DFKSNAKSLN NTDLDCIKNK INTSEKMKDL EEGSLTRTER 


SQHGRDI 

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References

[1]"Comparative genomics of Gardnerella vaginalis strains reveals substantial differences in metabolic and virulence potential."
Yeoman C.J., Yildirim S., Thomas S.M., Durkin A.S., Torralba M., Sutton G., Buhay C.J., Ding Y., Dugan-Rocha S.P., Muzny D.M., Qin X., Gibbs R.A., Leigh S.R., Stumpf R., White B.A., Highlander S.K., Nelson K.E., Wilson B.A.
PLoS ONE 5:E12411-E12411(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 14019 / 317.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002104 Genomic DNA. Translation: ADP38272.1.
RefSeqYP_003985295.1. NC_014644.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADP38272; ADP38272; HMPREF0421_20186.
GeneID9903725.
KEGGgvg:HMPREF0421_20186.
PATRIC42627201. VBIGarVag39333_0178.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000079971.
KOK01186.
OrthoDBEOG61CM2G.

Enzyme and pathway databases

BioCycGVAG525284:GI3V-192-MONOMER.

Family and domain databases

Gene3D2.120.10.10. 2 hits.
2.60.120.200. 1 hit.
InterProIPR002860. BNR_rpt.
IPR008985. ConA-like_lec_gl_sf.
IPR013320. ConA-like_subgrp.
IPR026856. Sialidase_fam.
IPR011040. Sialidases.
[Graphical view]
PANTHERPTHR10628. PTHR10628. 1 hit.
PfamPF02012. BNR. 1 hit.
[Graphical view]
SUPFAMSSF49899. SSF49899. 1 hit.
SSF50939. SSF50939. 2 hits.
ProtoNetSearch...

Entry information

Entry nameE3D837_GARV3
AccessionPrimary (citable) accession number: E3D837
Entry history
Integrated into UniProtKB/TrEMBL: January 11, 2011
Last sequence update: January 11, 2011
Last modified: April 16, 2014
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)