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Protein
Submitted name:

BNR/Asp-box repeat protein

Gene

HMPREF0421_20186

Organism
Gardnerella vaginalis (strain ATCC 14019 / 317)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. exo-alpha-sialidase activity Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciGVAG525284:GI3V-192-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
BNR/Asp-box repeat proteinImported
Gene namesi
Ordered Locus Names:HMPREF0421_20186Imported
OrganismiGardnerella vaginalis (strain ATCC 14019 / 317)Imported
Taxonomic identifieri525284 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeBifidobacterialesBifidobacteriaceaeGardnerella
ProteomesiUP000001453: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000079971.
KOiK01186.
OMAiTSPGNGI.
OrthoDBiEOG61CM2G.

Family and domain databases

Gene3Di2.120.10.10. 2 hits.
2.60.120.200. 1 hit.
InterProiIPR002860. BNR_rpt.
IPR013320. ConA-like_dom.
IPR026856. Sialidase_fam.
IPR011040. Sialidases.
[Graphical view]
PANTHERiPTHR10628. PTHR10628. 1 hit.
PfamiPF02012. BNR. 1 hit.
[Graphical view]
SUPFAMiSSF49899. SSF49899. 1 hit.
SSF50939. SSF50939. 2 hits.

Sequencei

Sequence statusi: Complete.

E3D837-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MERRSTKTTS LIEDIADIKG SEHTRFNHAT IKITPSSEIK KYSENESGIN
60 70 80 90 100
RKDKNEEINQ NEGIIGFKFV ANSDCDLLDI KPAQKSEASA QQEHTTPIIK
110 120 130 140 150
ISIKEDAPLL SAQNLLEDSA DANGAKEIAL QMEDALGACD GREHDFAITY
160 170 180 190 200
GSFGSRFYLD GYQCFASATN LGPQRVSGKA AEVCAAQAES SQIYDFYYSS
210 220 230 240 250
HLPNPEEIAN SATQAQPDIW FAGPTICARD IKRVSCNSSG TLHIQFRLRG
260 270 280 290 300
PGQHGVLFAA GTVGTKTNLE SSEKISVYAG PEGIKITLID SETCIKSVIE
310 320 330 340 350
AAASVDDGEW HDLIIRANRG AIDIYVDGYS ESHNIGQFWF ANIPELNAVS
360 370 380 390 400
IGEDLRGVRL MGEARTGGIY FSALTEGQIQ RISRVKPLVT TALFDTGYAG
410 420 430 440 450
SRSYRIPSLV KTRMGTLIAG ADQRTSVSND APNHINFVIR RSTDGGKTWK
460 470 480 490 500
PLQTVINMPG KNLGKLGASA IDSCPILDPA GKSERINVLI DLNPSGIGLT
510 520 530 540 550
NCKTDVGVDE CGRIKMEDRF GRHYAALMDG SAAVKLPCDS SEKECATKWL
560 570 580 590 600
VFPDGSIKNC DSHNDLRNNS HSNQTCDSST WNIWKSQEIA SESQPLFAEK
610 620 630 640 650
TCYIAQIYSD DDGKTWSATR LIDHMVKEPW MSFAGVCPGN GIVIRQSEKH
660 670 680 690 700
YGRILVPFYC SGKSKSHYSS GALISDDDGK TWSRGKMINE GRLINGKIVD
710 720 730 740 750
PATMQDDDAT SSETVFVERK NGDILAFFRN QNRSGCVGKA ISHDCGETWS
760 770 780 790 800
ELIFDTSLPE IFSQPSATCF NSENADNADC IAFANASQMM PYRGRGVVRF
810 820 830 840 850
SYDGGKTWAK SVCINPFHHV YQCLSSSNKR TLQLLWERET TGIYITAIDS
860 870 880 890 900
NLWKQDNLQI DFKSNAKSLN NTDLDCIKNK INTSEKMKDL EEGSLTRTER

SQHGRDI
Length:907
Mass (Da):99,756
Last modified:January 11, 2011 - v1
Checksum:i60F7F5FAA1041E2A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002104 Genomic DNA. Translation: ADP38272.1.
RefSeqiYP_003985295.1. NC_014644.1.

Genome annotation databases

EnsemblBacteriaiADP38272; ADP38272; HMPREF0421_20186.
GeneIDi9903725.
KEGGigvg:HMPREF0421_20186.
PATRICi42627201. VBIGarVag39333_0178.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002104 Genomic DNA. Translation: ADP38272.1.
RefSeqiYP_003985295.1. NC_014644.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADP38272; ADP38272; HMPREF0421_20186.
GeneIDi9903725.
KEGGigvg:HMPREF0421_20186.
PATRICi42627201. VBIGarVag39333_0178.

Phylogenomic databases

HOGENOMiHOG000079971.
KOiK01186.
OMAiTSPGNGI.
OrthoDBiEOG61CM2G.

Enzyme and pathway databases

BioCyciGVAG525284:GI3V-192-MONOMER.

Family and domain databases

Gene3Di2.120.10.10. 2 hits.
2.60.120.200. 1 hit.
InterProiIPR002860. BNR_rpt.
IPR013320. ConA-like_dom.
IPR026856. Sialidase_fam.
IPR011040. Sialidases.
[Graphical view]
PANTHERiPTHR10628. PTHR10628. 1 hit.
PfamiPF02012. BNR. 1 hit.
[Graphical view]
SUPFAMiSSF49899. SSF49899. 1 hit.
SSF50939. SSF50939. 2 hits.
ProtoNetiSearch...

Publicationsi

  1. "Comparative genomics of Gardnerella vaginalis strains reveals substantial differences in metabolic and virulence potential."
    Yeoman C.J., Yildirim S., Thomas S.M., Durkin A.S., Torralba M., Sutton G., Buhay C.J., Ding Y., Dugan-Rocha S.P., Muzny D.M., Qin X., Gibbs R.A., Leigh S.R., Stumpf R., White B.A., Highlander S.K., Nelson K.E., Wilson B.A.
    PLoS ONE 5:E12411-E12411(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 14019 / 317Imported.

Entry informationi

Entry nameiE3D837_GARV3
AccessioniPrimary (citable) accession number: E3D837
Entry historyi
Integrated into UniProtKB/TrEMBL: January 11, 2011
Last sequence update: January 11, 2011
Last modified: February 4, 2015
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.