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Protein
Submitted name:

LSM1 homolog, mRNA degradation associated

Gene

LSM1

Organism
Canis lupus familiaris (Dog) (Canis familiaris)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoproteinSAAS annotation

Enzyme and pathway databases

ReactomeiR-CFA-430039. mRNA decay by 5' to 3' exoribonuclease.

Names & Taxonomyi

Protein namesi
Submitted name:
LSM1 homolog, mRNA degradation associatedImported
Gene namesi
Name:LSM1Imported
OrganismiCanis lupus familiaris (Dog) (Canis familiaris)Imported
Taxonomic identifieri9615 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCarnivoraCaniformiaCanidaeCanis
Proteomesi
  • UP000002254 Componenti: Chromosome 16

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PaxDbiE2R7S6.

Expressioni

Gene expression databases

BgeeiENSCAFG00000006113.

Interactioni

Protein-protein interaction databases

STRINGi9615.ENSCAFP00000009190.

Structurei

3D structure databases

ProteinModelPortaliE2R7S6.
SMRiE2R7S6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini8 – 76SmInterPro annotationAdd BLAST69

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili93 – 120Sequence analysisAdd BLAST28

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG1782. Eukaryota.
ENOG411224Q. LUCA.
GeneTreeiENSGT00730000111133.
InParanoidiE2R7S6.
KOiK12620.
OMAiFHQTVER.
OrthoDBiEOG091G0UEO.
TreeFamiTF105846.

Family and domain databases

CDDicd01728. LSm1. 1 hit.
InterProiView protein in InterPro
IPR034104. Lsm1.
IPR010920. LSM_dom.
IPR001163. LSM_dom_euk/arc.
PfamiView protein in Pfam
PF01423. LSM. 1 hit.
SMARTiView protein in SMART
SM00651. Sm. 1 hit.
SUPFAMiSSF50182. SSF50182. 1 hit.

Sequencei

Sequence statusi: Complete.

E2R7S6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNYMPGTASL IEDIDKKHLV LLRDGRTLIG FLRSIDQFAN LVLHQTVERI
60 70 80 90 100
HVGKKYGDIP RGIFVVRGEN VVLLGEIDLE KESDTPLQQV SIEEILEEQR
110 120 130
VEQQTKLEAE KLKVQALKDR GLSIPRADTL DEY
Length:133
Mass (Da):15,179
Last modified:November 30, 2010 - v1
Checksum:iFF798CDA9447037A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAEX03010393 Genomic DNA. No translation available.
RefSeqiXP_532806.3. XM_532806.5.

Genome annotation databases

EnsembliENSCAFT00000009901; ENSCAFP00000009190; ENSCAFG00000006113.
GeneIDi475587.
KEGGicfa:475587.

Similar proteinsi

Entry informationi

Entry nameiE2R7S6_CANLF
AccessioniPrimary (citable) accession number: E2R7S6
Entry historyiIntegrated into UniProtKB/TrEMBL: November 30, 2010
Last sequence update: November 30, 2010
Last modified: August 30, 2017
This is version 54 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported