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E1Z6F7 (E1Z6F7_CHLVA) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Alpha-amylase RuleBase RU361134

EC=3.2.1.1 RuleBase RU361134
Gene names
ORF Names:CHLNCDRAFT_29945 EMBL EFN58641.1
OrganismChlorella variabilis (Green alga) [Complete proteome]
Taxonomic identifier554065 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeChlorophytaTrebouxiophyceaeChlorellalesChlorellaceaeChlorella

Protein attributes

Sequence length485 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units. RuleBase RU361134

Sequence similarities

Belongs to the glycosyl hydrolase 13 family. RuleBase RU003615

Ontologies

Keywords
   Biological processCarbohydrate metabolism RuleBase RU361134
   Molecular functionGlycosidase RuleBase RU361134
Hydrolase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functionalpha-amylase activity

Inferred from electronic annotation. Source: InterPro

calcium ion binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
E1Z6F7 [UniParc].

Last modified November 30, 2010. Version 1.
Checksum: 16228615AB719370

FASTA48554,025
        10         20         30         40         50         60 
MQACTWTRGH RSPTCRSSAV AHPRRLLARP STVRCSALVE EKTKDAGQGK DGASGEEDAA 

        70         80         90        100        110        120 
AALASAPATG LAAVPRPPKL PVAETICMEG FGWDSCKDGH WWKKVETTIP ELQAAGITHL 

       130        140        150        160        170        180 
WLPPPSQSVS PQGYLPGQLY NLNSNYGSKE ELESLNKALL LAGIRPVADV VINHRCAQFQ 

       190        200        210        220        230        240 
DENGVWNKYG DDPAACRWAI TCDDPVFQGT GNKDSGDDYA AAPDLDHHNP ELRDSLVDWL 

       250        260        270        280        290        300 
NWLKTDVGFE GWRFDFIRGY AAKYVKEYIE RTTGPDVFYV GENFVDLRWQ DSNLEYNQDE 

       310        320        330        340        350        360 
ARQKLVDFIK GTQYCTLFDF PTKGILQASP AGPLARWPRL LRADGRGKAP GLLGWWPEMA 

       370        380        390        400        410        420 
CTFVDNHDTG SSQQHWPFPK LHVMLGYAYI LTHPGIPCLF WEHHYDWGLA DQINKLVALR 

       430        440        450        460        470        480 
KRAGIRADSK LEILCAEGDM YVARCNGNVT IKMGPRYDMG GLVPKESDGW KMAAKGQDFA 


IWEKA 

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References

[1]"The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex."
Blanc G., Duncan G., Agarkova I., Borodovsky M., Gurnon J., Kuo A., Lindquist E., Lucas S., Pangilinan J., Polle J., Salamov A., Terry A., Yamada T., Dunigan D.D., Grigoriev I.V., Claverie J.M., Van Etten J.L.
Plant Cell 22:2943-2955(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NC64A EMBL EFN58641.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
GL433837 Genomic DNA. Translation: EFN58641.1.
RefSeqXP_005850743.1. XM_005850681.1.

3D structure databases

ProteinModelPortalE1Z6F7.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID17357988.
KEGGcvr:CHLNCDRAFT_29945.

Phylogenomic databases

KOK01176.

Family and domain databases

Gene3D2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProIPR012850. A-amylase_bs_C.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF07821. Alpha-amyl_C2. 1 hit.
PF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSPR00110. ALPHAAMYLASE.
SMARTSM00810. Alpha-amyl_C2. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 1 hit.
ProtoNetSearch...

Entry information

Entry nameE1Z6F7_CHLVA
AccessionPrimary (citable) accession number: E1Z6F7
Entry history
Integrated into UniProtKB/TrEMBL: November 30, 2010
Last sequence update: November 30, 2010
Last modified: July 9, 2014
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)