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Protein

Alpha-amylase

Gene

CHLNCDRAFT_29945

Organism
Chlorella variabilis (Green alga)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

GO - Molecular functioni

  1. alpha-amylase activity Source: UniProtKB-EC
  2. calcium ion binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotation, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
ORF Names:CHLNCDRAFT_29945Imported
OrganismiChlorella variabilis (Green alga)Imported
Taxonomic identifieri554065 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeChlorophytaTrebouxiophyceaeChlorellalesChlorellaceaeChlorella
ProteomesiUP000008141: Unassembled WGS sequence

Structurei

3D structure databases

ProteinModelPortaliE1Z6F7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Phylogenomic databases

InParanoidiE1Z6F7.
KOiK01176.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR012850. A-amylase_bs_C.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF07821. Alpha-amyl_C2. 1 hit.
PF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00810. Alpha-amyl_C2. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

E1Z6F7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQACTWTRGH RSPTCRSSAV AHPRRLLARP STVRCSALVE EKTKDAGQGK
60 70 80 90 100
DGASGEEDAA AALASAPATG LAAVPRPPKL PVAETICMEG FGWDSCKDGH
110 120 130 140 150
WWKKVETTIP ELQAAGITHL WLPPPSQSVS PQGYLPGQLY NLNSNYGSKE
160 170 180 190 200
ELESLNKALL LAGIRPVADV VINHRCAQFQ DENGVWNKYG DDPAACRWAI
210 220 230 240 250
TCDDPVFQGT GNKDSGDDYA AAPDLDHHNP ELRDSLVDWL NWLKTDVGFE
260 270 280 290 300
GWRFDFIRGY AAKYVKEYIE RTTGPDVFYV GENFVDLRWQ DSNLEYNQDE
310 320 330 340 350
ARQKLVDFIK GTQYCTLFDF PTKGILQASP AGPLARWPRL LRADGRGKAP
360 370 380 390 400
GLLGWWPEMA CTFVDNHDTG SSQQHWPFPK LHVMLGYAYI LTHPGIPCLF
410 420 430 440 450
WEHHYDWGLA DQINKLVALR KRAGIRADSK LEILCAEGDM YVARCNGNVT
460 470 480
IKMGPRYDMG GLVPKESDGW KMAAKGQDFA IWEKA
Length:485
Mass (Da):54,025
Last modified:November 30, 2010 - v1
Checksum:i16228615AB719370
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL433837 Genomic DNA. Translation: EFN58641.1.
RefSeqiXP_005850743.1. XM_005850681.1.

Genome annotation databases

GeneIDi17357988.
KEGGicvr:CHLNCDRAFT_29945.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL433837 Genomic DNA. Translation: EFN58641.1.
RefSeqiXP_005850743.1. XM_005850681.1.

3D structure databases

ProteinModelPortaliE1Z6F7.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi17357988.
KEGGicvr:CHLNCDRAFT_29945.

Phylogenomic databases

InParanoidiE1Z6F7.
KOiK01176.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR012850. A-amylase_bs_C.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF07821. Alpha-amyl_C2. 1 hit.
PF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00810. Alpha-amyl_C2. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex."
    Blanc G., Duncan G., Agarkova I., Borodovsky M., Gurnon J., Kuo A., Lindquist E., Lucas S., Pangilinan J., Polle J., Salamov A., Terry A., Yamada T., Dunigan D.D., Grigoriev I.V., Claverie J.M., Van Etten J.L.
    Plant Cell 22:2943-2955(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NC64AImported.

Entry informationi

Entry nameiE1Z6F7_CHLVA
AccessioniPrimary (citable) accession number: E1Z6F7
Entry historyi
Integrated into UniProtKB/TrEMBL: November 30, 2010
Last sequence update: November 30, 2010
Last modified: January 7, 2015
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.