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E1XUM0

- E1XUM0_AMBAR

UniProt

E1XUM0 - E1XUM0_AMBAR

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Protein
Pectate lyase
Gene
amba2.01
Organism
Ambrosia artemisiifolia (Short ragweed)
Status
Unreviewed - Annotation score: 2 out of 5 - Experimental evidence at transcript leveli

Functioni

Catalytic activityi

Eliminative cleavage of (1->4)-alpha-D-galacturonan to give oligosaccharides with 4-deoxy-alpha-D-galact-4-enuronosyl groups at their non-reducing ends.UniRule annotation

Cofactori

Binds 1 calcium ion. Required for its activity By similarity.UniRule annotation

Pathwayi

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. pectate lyase activity Source: UniProtKB-EC

GO - Biological processi

  1. pectin catabolic process Source: UniProtKB-UniPathway
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotationImported

Keywords - Ligandi

CalciumUniRule annotation, Metal-bindingUniRule annotation

Enzyme and pathway databases

UniPathwayiUPA00545; UER00824.

Names & Taxonomyi

Protein namesi
Recommended name:
Pectate lyaseUniRule annotation (EC:4.2.2.2UniRule annotation)
Gene namesi
Name:amba2.01Imported
OrganismiAmbrosia artemisiifolia (Short ragweed)Imported
Taxonomic identifieri4212 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridscampanulidsAsteralesAsteraceaeAsteroideaeHeliantheae allianceHeliantheaeAmbrosia

Pathology & Biotechi

Protein family/group databases

Allergomei24. Amb a 1.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2525 PredictedImported
Add
BLAST
Chaini26 – 397372 PredictedImported
PRO_5000643453Add
BLAST
Chaini26 – 397372pollen allergen Amb a 2.01Imported
PRO_5000643454Add
BLAST

Family & Domainsi

Sequence similaritiesi

Belongs to the polysaccharide lyase 1 family.UniRule annotation

Keywords - Domaini

SignalUniRule annotationImported

Family and domain databases

Gene3Di2.160.20.10. 1 hit.
InterProiIPR002022. Amb_allergen_dom.
IPR018082. AmbAllergen.
IPR006626. PbH1.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
[Graphical view]
PfamiPF00544. Pec_lyase_C. 1 hit.
[Graphical view]
PRINTSiPR00807. AMBALLERGEN.
SMARTiSM00656. Amb_all. 1 hit.
SM00710. PbH1. 3 hits.
[Graphical view]
SUPFAMiSSF51126. SSF51126. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

E1XUM0-1 [UniParc]FASTAAdd to Basket

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MGIKHCCYIL YFTLALVTLV QAGRLGEEVD ILPSPNDTRR SLQGCEAHNI    50
IDKCWRCKPD WAENRQALGD CAQGFGKATH GGKWGDIYMV TSDQDDDVVN 100
PKEGTLRFGA TQDRPLWIIF QRDMIIYLQQ EMVVTSDKTI DGRGAKVELV 150
YGGITLMNVK NVIIHNIDIH DVRVLPGGRI KSNGGPAIPR HQSDGDAIHV 200
TGSSDIWIDH CTLSKSFDGL VDVNWGSTGV TISNCKFTHH EKAVLLGASD 250
THFQDLKMHV TLAYNIFTNT VHERMPRCRF GFFQIVNNFY DRWDKYAIGG 300
SSNPTILSQG NKFVAPDFIY KKNVCLRTGA QEPEWMTWNW RTQNDVLENG 350
AIFVASGSDP VLTAEQNAGM MQAEPGDMVP QLTMNAGVLT CSPGAPC 397
Length:397
Mass (Da):44,083
Last modified:November 30, 2010 - v1
Checksum:iF0E4BFE1ABA6B414
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FR669665 mRNA. Translation: CBW30994.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FR669665 mRNA. Translation: CBW30994.1 .

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein family/group databases

Allergomei 24. Amb a 1.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Enzyme and pathway databases

UniPathwayi UPA00545 ; UER00824 .

Family and domain databases

Gene3Di 2.160.20.10. 1 hit.
InterProi IPR002022. Amb_allergen_dom.
IPR018082. AmbAllergen.
IPR006626. PbH1.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
[Graphical view ]
Pfami PF00544. Pec_lyase_C. 1 hit.
[Graphical view ]
PRINTSi PR00807. AMBALLERGEN.
SMARTi SM00656. Amb_all. 1 hit.
SM00710. PbH1. 3 hits.
[Graphical view ]
SUPFAMi SSF51126. SSF51126. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Isoform analysis of Amb a 1 and Amb a 2."
    Nandy A., Mitulski L.
    Submitted (JUL-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiE1XUM0_AMBAR
AccessioniPrimary (citable) accession number: E1XUM0
Entry historyi
Integrated into UniProtKB/TrEMBL: November 30, 2010
Last sequence update: November 30, 2010
Last modified: July 9, 2014
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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