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E1XUM0

- E1XUM0_AMBAR

UniProt

E1XUM0 - E1XUM0_AMBAR

Protein

Pectate lyase

Gene

amba2.01

Organism
Ambrosia artemisiifolia (Short ragweed)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 14 (01 Oct 2014)
      Sequence version 1 (30 Nov 2010)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Eliminative cleavage of (1->4)-alpha-D-galacturonan to give oligosaccharides with 4-deoxy-alpha-D-galact-4-enuronosyl groups at their non-reducing ends.UniRule annotation

    Cofactori

    Binds 1 calcium ion. Required for its activity.UniRule annotation

    Pathwayi

    GO - Molecular functioni

    1. metal ion binding Source: UniProtKB-KW
    2. pectate lyase activity Source: UniProtKB-EC

    GO - Biological processi

    1. pectin catabolic process Source: UniProtKB-UniPathway

    Keywords - Molecular functioni

    LyaseUniRule annotationImported

    Keywords - Ligandi

    CalciumUniRule annotation, Metal-bindingUniRule annotation

    Enzyme and pathway databases

    UniPathwayiUPA00545; UER00824.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Pectate lyaseUniRule annotation (EC:4.2.2.2UniRule annotation)
    Gene namesi
    Name:amba2.01Imported
    OrganismiAmbrosia artemisiifolia (Short ragweed)Imported
    Taxonomic identifieri4212 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridscampanulidsAsteralesAsteraceaeAsteroideaeHeliantheae allianceHeliantheaeAmbrosia

    Pathology & Biotechi

    Protein family/group databases

    Allergomei24. Amb a 1.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 2525 PotentialImportedAdd
    BLAST
    Chaini26 – 397372 PotentialImportedPRO_5000643453Add
    BLAST
    Chaini26 – 397372pollen allergen Amb a 2.01ImportedPRO_5000643454Add
    BLAST

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the polysaccharide lyase 1 family.UniRule annotation

    Keywords - Domaini

    SignalUniRule annotationImported

    Family and domain databases

    Gene3Di2.160.20.10. 1 hit.
    InterProiIPR002022. Amb_allergen_dom.
    IPR018082. AmbAllergen.
    IPR006626. PbH1.
    IPR012334. Pectin_lyas_fold.
    IPR011050. Pectin_lyase_fold/virulence.
    [Graphical view]
    PfamiPF00544. Pec_lyase_C. 1 hit.
    [Graphical view]
    PRINTSiPR00807. AMBALLERGEN.
    SMARTiSM00656. Amb_all. 1 hit.
    SM00710. PbH1. 3 hits.
    [Graphical view]
    SUPFAMiSSF51126. SSF51126. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    E1XUM0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MGIKHCCYIL YFTLALVTLV QAGRLGEEVD ILPSPNDTRR SLQGCEAHNI    50
    IDKCWRCKPD WAENRQALGD CAQGFGKATH GGKWGDIYMV TSDQDDDVVN 100
    PKEGTLRFGA TQDRPLWIIF QRDMIIYLQQ EMVVTSDKTI DGRGAKVELV 150
    YGGITLMNVK NVIIHNIDIH DVRVLPGGRI KSNGGPAIPR HQSDGDAIHV 200
    TGSSDIWIDH CTLSKSFDGL VDVNWGSTGV TISNCKFTHH EKAVLLGASD 250
    THFQDLKMHV TLAYNIFTNT VHERMPRCRF GFFQIVNNFY DRWDKYAIGG 300
    SSNPTILSQG NKFVAPDFIY KKNVCLRTGA QEPEWMTWNW RTQNDVLENG 350
    AIFVASGSDP VLTAEQNAGM MQAEPGDMVP QLTMNAGVLT CSPGAPC 397
    Length:397
    Mass (Da):44,083
    Last modified:November 30, 2010 - v1
    Checksum:iF0E4BFE1ABA6B414
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FR669665 mRNA. Translation: CBW30994.1.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FR669665 mRNA. Translation: CBW30994.1 .

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein family/group databases

    Allergomei 24. Amb a 1.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Enzyme and pathway databases

    UniPathwayi UPA00545 ; UER00824 .

    Family and domain databases

    Gene3Di 2.160.20.10. 1 hit.
    InterProi IPR002022. Amb_allergen_dom.
    IPR018082. AmbAllergen.
    IPR006626. PbH1.
    IPR012334. Pectin_lyas_fold.
    IPR011050. Pectin_lyase_fold/virulence.
    [Graphical view ]
    Pfami PF00544. Pec_lyase_C. 1 hit.
    [Graphical view ]
    PRINTSi PR00807. AMBALLERGEN.
    SMARTi SM00656. Amb_all. 1 hit.
    SM00710. PbH1. 3 hits.
    [Graphical view ]
    SUPFAMi SSF51126. SSF51126. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Isoform analysis of Amb a 1 and Amb a 2."
      Nandy A., Mitulski L.
      Submitted (JUL-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.

    Entry informationi

    Entry nameiE1XUM0_AMBAR
    AccessioniPrimary (citable) accession number: E1XUM0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 30, 2010
    Last sequence update: November 30, 2010
    Last modified: October 1, 2014
    This is version 14 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)