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Protein

Pectate lyase

Gene

amba1.3

Organism
Ambrosia artemisiifolia (Short ragweed)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Catalytic activityi

Eliminative cleavage of (1->4)-alpha-D-galacturonan to give oligosaccharides with 4-deoxy-alpha-D-galact-4-enuronosyl groups at their non-reducing ends.UniRule annotation

Cofactori

Ca2+UniRule annotationNote: Binds 1 Ca2+ ion. Required for its activity.UniRule annotation

Pathwayi: pectin degradation

This protein is involved in step 2 of the subpathway that synthesizes 2-dehydro-3-deoxy-D-gluconate from pectin.UniRule annotation
Proteins known to be involved in the 5 steps of the subpathway in this organism are:
  1. no protein annotated in this organism
  2. Pectate lyase 4, Pectate lyase 1, Pectate lyase 2, Pectate lyase (amba1.3), Pectate lyase (amba1.3), Pectate lyase (amba1.2), Pectate lyase (amba1.3), Pectate lyase (amba1.4), Pectate lyase (amba1.3), Pectate lyase (amba1.3), Pectate lyase (amba1), Pectate lyase (amba2.01), Pectate lyase (amba2.01), Pectate lyase 5, Pectate lyase 3
  3. no protein annotated in this organism
  4. no protein annotated in this organism
  5. no protein annotated in this organism
This subpathway is part of the pathway pectin degradation, which is itself part of Glycan metabolism.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes 2-dehydro-3-deoxy-D-gluconate from pectin, the pathway pectin degradation and in Glycan metabolism.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLyaseUniRule annotationImported
LigandCalciumUniRule annotation, Metal-bindingUniRule annotation

Enzyme and pathway databases

UniPathwayiUPA00545; UER00824.

Names & Taxonomyi

Protein namesi
Recommended name:
Pectate lyaseUniRule annotation (EC:4.2.2.2UniRule annotation)
Gene namesi
Name:amba1.3Imported
OrganismiAmbrosia artemisiifolia (Short ragweed)Imported
Taxonomic identifieri4212 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridscampanulidsAsteralesAsteraceaeAsteroideaeHeliantheae allianceHeliantheaeAmbrosia

Pathology & Biotechi

Protein family/group databases

Allergomei24. Amb a 1.
9519. Amb a 1.0304.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 25UniRule annotationAdd BLAST25
ChainiPRO_500512763326 – 397Pectate lyaseUniRule annotationAdd BLAST372

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini123 – 319Amb_allInterPro annotationAdd BLAST197

Sequence similaritiesi

Belongs to the polysaccharide lyase 1 family.UniRule annotation

Keywords - Domaini

SignalUniRule annotation

Family and domain databases

Gene3Di2.160.20.10. 2 hits.
InterProiView protein in InterPro
IPR018082. AmbAllergen.
IPR002022. Pec_lyase.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
PfamiView protein in Pfam
PF00544. Pec_lyase_C. 1 hit.
PRINTSiPR00807. AMBALLERGEN.
SMARTiView protein in SMART
SM00656. Amb_all. 1 hit.
SUPFAMiSSF51126. SSF51126. 1 hit.

Sequencei

Sequence statusi: Complete.

E1XUL4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGIKQCCYIL YFTLALVALL QPVRSAEGVG EILPSVNETR SLQACEALNI
60 70 80 90 100
IDKCWRGKAD WENNRQALAD CAQGFAKGTY GGKWGDVYTV TSNLDDDVAN
110 120 130 140 150
PKEGTLRFAA AQNRPLWIIF KNDMVINLNQ ELVVNSDKTI DGRGVKVEII
160 170 180 190 200
NGGLTLMNVK NIIIHNINIH DVKVLPGGMI KSNDGPPILR QASDGDTINV
210 220 230 240 250
AGSSQIWIDH CSLSKSFDGL VDVTLGSTHV TISNCKFTQQ SKAILLGADD
260 270 280 290 300
THVQDKGMLA TVAFNMFTDN VDQRMPRCRF GFFQVVNNNY DRWGTYAIGG
310 320 330 340 350
SSAPTILCQG NRFLAPDDQI KKNVLARTGT GAAESMAWNW RSDKDLLENG
360 370 380 390
AIFVTSGSDP VLTPVQSAGM IPAEPGEAAI KLTSSAGVLS CRPGAPC
Length:397
Mass (Da):42,913
Last modified:November 30, 2010 - v1
Checksum:iC079412575853D0A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FR669659 mRNA. Translation: CBW30988.1.

Similar proteinsi

Entry informationi

Entry nameiE1XUL4_AMBAR
AccessioniPrimary (citable) accession number: E1XUL4
Entry historyiIntegrated into UniProtKB/TrEMBL: November 30, 2010
Last sequence update: November 30, 2010
Last modified: August 30, 2017
This is version 25 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)