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E1XUL3

- E1XUL3_AMBAR

UniProt

E1XUL3 - E1XUL3_AMBAR

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Protein
Pectate lyase
Gene
amba1.2
Organism
Ambrosia artemisiifolia (Short ragweed)
Status
Unreviewed - Annotation score: 2 out of 5 - Experimental evidence at transcript leveli

Functioni

Catalytic activityi

Eliminative cleavage of (1->4)-alpha-D-galacturonan to give oligosaccharides with 4-deoxy-alpha-D-galact-4-enuronosyl groups at their non-reducing ends.UniRule annotation

Cofactori

Binds 1 calcium ion. Required for its activity By similarity.UniRule annotation

Pathwayi

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. pectate lyase activity Source: UniProtKB-EC
Complete GO annotation...

GO - Biological processi

  1. pectin catabolic process Source: UniProtKB-UniPathway
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotationImported

Keywords - Ligandi

CalciumUniRule annotation, Metal-bindingUniRule annotation

Enzyme and pathway databases

UniPathwayiUPA00545; UER00824.

Names & Taxonomyi

Protein namesi
Recommended name:
Pectate lyaseUniRule annotation (EC:4.2.2.2UniRule annotation)
Gene namesi
Name:amba1.2Imported
OrganismiAmbrosia artemisiifolia (Short ragweed)Imported
Taxonomic identifieri4212 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridscampanulidsAsteralesAsteraceaeAsteroideaeHeliantheae allianceHeliantheaeAmbrosia

Pathology & Biotechi

Protein family/group databases

Allergomei24. Amb a 1.
9516. Amb a 1.0202.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2525 PredictedImported
Add
BLAST
Chaini26 – 398373 PredictedImported
PRO_5000643439Add
BLAST
Chaini26 – 398373pollen allergen Amb a 1.2Imported
PRO_5000643440Add
BLAST

Family & Domainsi

Sequence similaritiesi

Belongs to the polysaccharide lyase 1 family.UniRule annotation

Keywords - Domaini

SignalUniRule annotationImported

Family and domain databases

Gene3Di2.160.20.10. 1 hit.
InterProiIPR002022. Amb_allergen_dom.
IPR018082. AmbAllergen.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
[Graphical view]
PfamiPF00544. Pec_lyase_C. 1 hit.
[Graphical view]
PRINTSiPR00807. AMBALLERGEN.
SMARTiSM00656. Amb_all. 1 hit.
[Graphical view]
SUPFAMiSSF51126. SSF51126. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

E1XUL3-1 [UniParc]FASTAAdd to Basket

« Hide

MGIKHCCYIL YFTLALVTLL QPVRSAEDVE EFLPSANETR RSLKACEAHN    50
IIDKCWRCKA DWANNRQALA DCAQGFAKGT YGGKHGDVYT VTSDKDDDVA 100
NPKEGTLRFA AAQNRPLWII FKRNMVIHLN QELVVNSDKT IDGRGVKVNI 150
VNAGLTLMNV KNIIIHNINI HDIKVCPGGM IKSNDGPPIL RQQSDGDAIN 200
VAGSSQIWID HCSLSKASDG LLDITLGSSH VTVSNCKFTQ HQFVLLLGAD 250
DTHYQDKGML ATVAFNMFTD HVDQRMPRCR FGFFQVVNNN YDRWGTYAIG 300
GSSAPTILSQ GNRFFAPDDI IKKNVLARTG TGNAESMSWN WRTDKDLLEN 350
GAIFLPSGSD PVLTPEQKAG MIPAEPGEAV LRLTSSAGVL SCHQGAPC 398
Length:398
Mass (Da):43,637
Last modified:November 30, 2010 - v1
Checksum:iBB14C662D9A4DCDA
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FR669658 mRNA. Translation: CBW30987.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FR669658 mRNA. Translation: CBW30987.1 .

3D structure databases

ModBasei Search...

Protein family/group databases

Allergomei 24. Amb a 1.
9516. Amb a 1.0202.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Enzyme and pathway databases

UniPathwayi UPA00545 ; UER00824 .

Family and domain databases

Gene3Di 2.160.20.10. 1 hit.
InterProi IPR002022. Amb_allergen_dom.
IPR018082. AmbAllergen.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
[Graphical view ]
Pfami PF00544. Pec_lyase_C. 1 hit.
[Graphical view ]
PRINTSi PR00807. AMBALLERGEN.
SMARTi SM00656. Amb_all. 1 hit.
[Graphical view ]
SUPFAMi SSF51126. SSF51126. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Isoform analysis of Amb a 1 and Amb a 2."
    Nandy A., Mitulski L.
    Submitted (JUL-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiE1XUL3_AMBAR
AccessioniPrimary (citable) accession number: E1XUL3
Entry historyi
Integrated into UniProtKB/TrEMBL: November 30, 2010
Last sequence update: November 30, 2010
Last modified: July 9, 2014
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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