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E1WY06

- E1WY06_BACMS

UniProt

E1WY06 - E1WY06_BACMS

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Protein
Alanine racemase
Gene
alr, BMS_2785
Organism
Bacteriovorax marinus (strain ATCC BAA-682 / DSM 15412 / SJ)
Status
Unreviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids By similarity.UniRule annotation

Catalytic activityi

L-alanine = D-alanine.UniRule annotation

Cofactori

Pyridoxal phosphate By similarity.UniRule annotationSAAS annotations

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei35 – 351Proton acceptor; specific for D-alanine By similarityUniRule annotation
Binding sitei137 – 1371Substrate By similarityUniRule annotation
Active sitei271 – 2711Proton acceptor; specific for L-alanine By similarityUniRule annotation
Binding sitei317 – 3171Substrate; via amide nitrogen By similarityUniRule annotation

GO - Molecular functioni

  1. alanine racemase activity Source: UniProtKB-HAMAP
  2. pyridoxal phosphate binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. D-alanine biosynthetic process Source: UniProtKB-UniPathway
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotationSAAS annotations

Keywords - Ligandi

Pyridoxal phosphateUniRule annotationSAAS annotations

Enzyme and pathway databases

BioCyciBMAR862908:GJBX-2648-MONOMER.
UniPathwayiUPA00042; UER00497.

Names & Taxonomyi

Protein namesi
Recommended name:
Alanine racemaseUniRule annotation (EC:5.1.1.1UniRule annotation)
Gene namesi
Name:alrImported
Ordered Locus Names:BMS_2785Imported
OrganismiBacteriovorax marinus (strain ATCC BAA-682 / DSM 15412 / SJ)Imported
Taxonomic identifieri862908 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaBdellovibrionalesBacteriovoracaceaeBacteriovorax
ProteomesiUP000008963: Chromosome

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei35 – 351N6-(pyridoxal phosphate)lysine By similarityUniRule annotation

Structurei

3D structure databases

ProteinModelPortaliE1WY06.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

KOiK01775.
OMAiNFFVAHI.

Family and domain databases

Gene3Di2.40.37.10. 1 hit.
3.20.20.10. 1 hit.
HAMAPiMF_01201. Ala_racemase.
InterProiIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR029066. PLP-binding_barrel.
[Graphical view]
PfamiPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSiPR00992. ALARACEMASE.
SMARTiSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMiSSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsiTIGR00492. alr. 1 hit.

Sequencei

Sequence statusi: Complete.

E1WY06-1 [UniParc]FASTAAdd to Basket

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MRFRSRHFIS FEKLENNYKK LKEICVDNKI IFMVKANAYG HGVIPIVRHS    50
VEKLGITEFG CASLGEALLL REELYDLEFE IYVFSDVQVE LRECAEIYLN 100
RRIIPVISNR DDLDFILNSR EFENFPLFIK FNTGMNRLGL EMDKVDEVIR 150
SIRVSGRKSI YHLMTHLSSS SLPIKKNKRN IIQFENFEKI KKAFSDAGIE 200
VERTSIANSG AIEQGAGLGE THVRPGLMMY GPSSMLPQYS DLSLWSGEII 250
SKLETYVISI FDVEKGQPVG YGATPCPSKG KVAIVALGYG DGFTTRYIGT 300
HLYHKDIKGK VVGRVNMDMA QVFFDENSLP DLKVGDSFTL WDHSAERFAE 350
FCKEAKIIPY EVFIGITQRV PKIYS 375
Length:375
Mass (Da):42,675
Last modified:November 30, 2010 - v1
Checksum:iD13D3306B5D76302
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FQ312005 Genomic DNA. Translation: CBW27561.1.
RefSeqiWP_014245335.1. NC_016620.1.
YP_005036519.1. NC_016620.1.

Genome annotation databases

EnsemblBacteriaiCBW27561; CBW27561; BMS_2785.
GeneIDi11550197.
KEGGibmx:BMS_2785.
PATRICi42741533. VBIBacMar168520_2661.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FQ312005 Genomic DNA. Translation: CBW27561.1 .
RefSeqi WP_014245335.1. NC_016620.1.
YP_005036519.1. NC_016620.1.

3D structure databases

ProteinModelPortali E1WY06.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CBW27561 ; CBW27561 ; BMS_2785 .
GeneIDi 11550197.
KEGGi bmx:BMS_2785.
PATRICi 42741533. VBIBacMar168520_2661.

Phylogenomic databases

KOi K01775.
OMAi NFFVAHI.

Enzyme and pathway databases

UniPathwayi UPA00042 ; UER00497 .
BioCyci BMAR862908:GJBX-2648-MONOMER.

Family and domain databases

Gene3Di 2.40.37.10. 1 hit.
3.20.20.10. 1 hit.
HAMAPi MF_01201. Ala_racemase.
InterProi IPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR029066. PLP-binding_barrel.
[Graphical view ]
Pfami PF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view ]
PRINTSi PR00992. ALARACEMASE.
SMARTi SM01005. Ala_racemase_C. 1 hit.
[Graphical view ]
SUPFAMi SSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsi TIGR00492. alr. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "A small predatory core genome in the divergent marine Bacteriovorax marinus SJ and the terrestrial Bdellovibrio bacteriovorus."
    Crossman L.C., Chen H., Cerdeno-Tarraga A.M., Brooks K., Quail M.A., Pineiro S.A., Hobley L., Sockett R.E., Bentley S.D., Parkhill J., Williams H.N., Stine O.C.
    ISME J. 7:148-160(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-682 / DSM 15412 / SJ.

Entry informationi

Entry nameiE1WY06_BACMS
AccessioniPrimary (citable) accession number: E1WY06
Entry historyi
Integrated into UniProtKB/TrEMBL: November 30, 2010
Last sequence update: November 30, 2010
Last modified: September 3, 2014
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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