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E1WY06

- E1WY06_BACMS

UniProt

E1WY06 - E1WY06_BACMS

Protein

Alanine racemase

Gene

alr

Organism
Bacteriovorax marinus (strain ATCC BAA-682 / DSM 15412 / SJ)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 31 (01 Oct 2014)
      Sequence version 1 (30 Nov 2010)
      Previous versions | rss
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    Functioni

    Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids.UniRule annotation

    Catalytic activityi

    L-alanine = D-alanine.UniRule annotation

    Cofactori

    Pyridoxal phosphate.UniRule annotationSAAS annotation

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei35 – 351Proton acceptor; specific for D-alanineUniRule annotation
    Binding sitei137 – 1371SubstrateUniRule annotation
    Active sitei271 – 2711Proton acceptor; specific for L-alanineUniRule annotation
    Binding sitei317 – 3171Substrate; via amide nitrogenUniRule annotation

    GO - Molecular functioni

    1. alanine racemase activity Source: UniProtKB-HAMAP
    2. pyridoxal phosphate binding Source: UniProtKB-HAMAP

    GO - Biological processi

    1. D-alanine biosynthetic process Source: UniProtKB-UniPathway

    Keywords - Molecular functioni

    IsomeraseUniRule annotationSAAS annotation

    Keywords - Ligandi

    Pyridoxal phosphateUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciBMAR862908:GJBX-2648-MONOMER.
    UniPathwayiUPA00042; UER00497.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Alanine racemaseUniRule annotation (EC:5.1.1.1UniRule annotation)
    Gene namesi
    Name:alrImported
    Ordered Locus Names:BMS_2785Imported
    OrganismiBacteriovorax marinus (strain ATCC BAA-682 / DSM 15412 / SJ)Imported
    Taxonomic identifieri862908 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaBdellovibrionalesBacteriovoracaceaeBacteriovorax
    ProteomesiUP000008963: Chromosome

    PTM / Processingi

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei35 – 351N6-(pyridoxal phosphate)lysineUniRule annotation

    Structurei

    3D structure databases

    ProteinModelPortaliE1WY06.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the alanine racemase family.UniRule annotation

    Phylogenomic databases

    KOiK01775.
    OMAiNFFVAHI.

    Family and domain databases

    Gene3Di2.40.37.10. 1 hit.
    3.20.20.10. 1 hit.
    HAMAPiMF_01201. Ala_racemase.
    InterProiIPR000821. Ala_racemase.
    IPR009006. Ala_racemase/Decarboxylase_C.
    IPR011079. Ala_racemase_C.
    IPR001608. Ala_racemase_N.
    IPR029066. PLP-binding_barrel.
    [Graphical view]
    PfamiPF00842. Ala_racemase_C. 1 hit.
    PF01168. Ala_racemase_N. 1 hit.
    [Graphical view]
    PRINTSiPR00992. ALARACEMASE.
    SMARTiSM01005. Ala_racemase_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF50621. SSF50621. 1 hit.
    SSF51419. SSF51419. 1 hit.
    TIGRFAMsiTIGR00492. alr. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    E1WY06-1 [UniParc]FASTAAdd to Basket

    « Hide

    MRFRSRHFIS FEKLENNYKK LKEICVDNKI IFMVKANAYG HGVIPIVRHS    50
    VEKLGITEFG CASLGEALLL REELYDLEFE IYVFSDVQVE LRECAEIYLN 100
    RRIIPVISNR DDLDFILNSR EFENFPLFIK FNTGMNRLGL EMDKVDEVIR 150
    SIRVSGRKSI YHLMTHLSSS SLPIKKNKRN IIQFENFEKI KKAFSDAGIE 200
    VERTSIANSG AIEQGAGLGE THVRPGLMMY GPSSMLPQYS DLSLWSGEII 250
    SKLETYVISI FDVEKGQPVG YGATPCPSKG KVAIVALGYG DGFTTRYIGT 300
    HLYHKDIKGK VVGRVNMDMA QVFFDENSLP DLKVGDSFTL WDHSAERFAE 350
    FCKEAKIIPY EVFIGITQRV PKIYS 375
    Length:375
    Mass (Da):42,675
    Last modified:November 30, 2010 - v1
    Checksum:iD13D3306B5D76302
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FQ312005 Genomic DNA. Translation: CBW27561.1.
    RefSeqiWP_014245335.1. NC_016620.1.
    YP_005036519.1. NC_016620.1.

    Genome annotation databases

    EnsemblBacteriaiCBW27561; CBW27561; BMS_2785.
    GeneIDi11550197.
    KEGGibmx:BMS_2785.
    PATRICi42741533. VBIBacMar168520_2661.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FQ312005 Genomic DNA. Translation: CBW27561.1 .
    RefSeqi WP_014245335.1. NC_016620.1.
    YP_005036519.1. NC_016620.1.

    3D structure databases

    ProteinModelPortali E1WY06.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CBW27561 ; CBW27561 ; BMS_2785 .
    GeneIDi 11550197.
    KEGGi bmx:BMS_2785.
    PATRICi 42741533. VBIBacMar168520_2661.

    Phylogenomic databases

    KOi K01775.
    OMAi NFFVAHI.

    Enzyme and pathway databases

    UniPathwayi UPA00042 ; UER00497 .
    BioCyci BMAR862908:GJBX-2648-MONOMER.

    Family and domain databases

    Gene3Di 2.40.37.10. 1 hit.
    3.20.20.10. 1 hit.
    HAMAPi MF_01201. Ala_racemase.
    InterProi IPR000821. Ala_racemase.
    IPR009006. Ala_racemase/Decarboxylase_C.
    IPR011079. Ala_racemase_C.
    IPR001608. Ala_racemase_N.
    IPR029066. PLP-binding_barrel.
    [Graphical view ]
    Pfami PF00842. Ala_racemase_C. 1 hit.
    PF01168. Ala_racemase_N. 1 hit.
    [Graphical view ]
    PRINTSi PR00992. ALARACEMASE.
    SMARTi SM01005. Ala_racemase_C. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50621. SSF50621. 1 hit.
    SSF51419. SSF51419. 1 hit.
    TIGRFAMsi TIGR00492. alr. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "A small predatory core genome in the divergent marine Bacteriovorax marinus SJ and the terrestrial Bdellovibrio bacteriovorus."
      Crossman L.C., Chen H., Cerdeno-Tarraga A.M., Brooks K., Quail M.A., Pineiro S.A., Hobley L., Sockett R.E., Bentley S.D., Parkhill J., Williams H.N., Stine O.C.
      ISME J. 7:148-160(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC BAA-682 / DSM 15412 / SJImported.

    Entry informationi

    Entry nameiE1WY06_BACMS
    AccessioniPrimary (citable) accession number: E1WY06
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 30, 2010
    Last sequence update: November 30, 2010
    Last modified: October 1, 2014
    This is version 31 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3