E1VI72 (E1VI72_9GAMM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
RNA polymerase sigma-24 factor EMBL CBL44514.1

Gene names

Name:	rpoE EMBL CBL44514.1
ORF Names:	HDN1F_09310 EMBL CBL44514.1

Organism

gamma proteobacterium HdN1 EMBL CBL44514.1

Taxonomic identifier

83406 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › unclassified Gammaproteobacteria › unclassified Gammaproteobacteria (miscellaneous)

Protein attributes

Sequence length	193 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Ligand	DNA-binding SAAS SAAS007627
Molecular function	Sigma factor SAAS SAAS007627
Gene Ontology (GO)
Biological_process	DNA-dependent transcription, initiation Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	E1VI72 [UniParc]. Last modified November 30, 2010. Version 1. Checksum: 26D42D73450CEE0F	FASTA	193	22,480
	10 20 30 40 50 60 MTERDADQLL VERVQRGDKR AFDLLVRKYQ HRVIAVINRY VRDPDEAMDI AQETFVKAYR 70 80 90 100 110 120 ALDRFRGESA FYTWIFRIAV NTAKNFIVAR GRRPPDADVA IEDAEYHDGG IALHELANPE 130 140 150 160 170 180 NQLFRDELEQ AVQRALDKLP EDLRAAVTLR EFDGLSYEEI AEVMDCPIGT VRSRIFRARE 190 VIDNEIRQWV VND

References

[1]

"Alkane degradation by a new type of denitrifying bacterium with possible involvement of the electron acceptor in substrate activation." Widdel F., Rabus R., Grundmann O., Werner I., Schreiber F., Ehrenreich P., Behrends A., Wilkes H., Kube M., Reinhardt R., Zedelius J. Environ. Microbiol. 0:0-0(2010) Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases
EMBL GenBank DDBJ	FP929140 Genomic DNA. Translation: CBL44514.1.
RefSeq	YP_003810171.1. NC_014366.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CBL44514; CBL44514; HDN1F_09310.
GeneID	9700418.
KEGG	gpb:HDN1F_09310.
PATRIC	42344697. VBIGamPro61291_1010.
Phylogenomic databases
HOGENOM	HOG000094755.
KO	K03088.
Enzyme and pathway databases
BioCyc	GPRO83406:GIWA-932-MONOMER.
Family and domain databases
Gene3D	1.10.10.10. 1 hit.
InterPro	IPR014284. RNA_pol_sigma-70_dom. IPR007627. RNA_pol_sigma70_r2. IPR013249. RNA_pol_sigma70_r4_t2. IPR014286. RNA_pol_sigma70_RpoE. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF04542. Sigma70_r2. 1 hit. PF08281. Sigma70_r4_2. 1 hit. [Graphical view]
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 1 hit.
TIGRFAMs	TIGR02939. RpoE_Sigma70. 1 hit. TIGR02937. sigma70-ECF. 1 hit.
ProtoNet	Search...

Entry information

Entry name

E1VI72_9GAMM

Accession

Primary (citable) accession number: E1VI72

Entry history

Integrated into UniProtKB/TrEMBL:	November 30, 2010
Last sequence update:	November 30, 2010
Last modified:	May 1, 2013
This is version 14 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)