E1SB94 (E1SB94_PANVC) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
RNA polymerase sigma factor RuleBase RU000716

Gene names

Name:	rpoE EMBL ADO10494.1
Ordered Locus Names:	Pvag_2321 EMBL ADO10494.1

Organism

Pantoea vagans (strain C9-1) (Pantoea agglomerans (strain C9-1)) [Complete proteome] [HAMAP] EMBL ADO10494.1

Taxonomic identifier

712898 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Pantoea › Pantoea vagans

Protein attributes

Sequence length	191 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the sigma-70 factor family. ECF subfamily. RuleBase RU000716

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Ligand	DNA-binding SAAS SAAS013325 RuleBase RU000716
Molecular function	Sigma factor SAAS SAAS013325 RuleBase RU000716
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA-dependent transcription, initiation Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	E1SB94 [UniParc]. Last modified November 30, 2010. Version 1. Checksum: 84BDDFE20C2E8D77	FASTA	191	21,668
	10 20 30 40 50 60 MSEQLTDQVL VERVQKGDQK AFNLLVIRYQ HKVASLVSRY VPSGDVPDVV QESFIKAYRA 70 80 90 100 110 120 LDSFRGDSAF YTWLYRIAVN TAKNYLVAQG RRPPSSDVDA IDAENFESAG ALKEISNPEN 130 140 150 160 170 180 LMLSDELKQI VFRTIEALPE DLRMAITLRE LDGLSYEEIA VIMDCPVGTV RSRIFRAREA 190 IDNKVQPLIQ R

References

[1]

"Genome sequence of the biocontrol agent Pantoea vagans strain C9-1." Smits T.H., Rezzonico F., Kamber T., Goesmann A., Ishimaru C.A., Stockwell V.O., Frey J.E., Duffy B. J. Bacteriol. 192:6486-6487(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: C9-1 EMBL ADO10494.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002206 Genomic DNA. Translation: ADO10494.1.
RefSeq	YP_003931943.1. NC_014562.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADO10494; ADO10494; Pvag_2321.
GeneID	9790834.
KEGG	pva:Pvag_2321.
PATRIC	42420771. VBIPanVag152020_2490.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000094755.
KO	K03088.
Enzyme and pathway databases
BioCyc	PVAG712898:GHQ2-2314-MONOMER.
Family and domain databases
Gene3D	1.10.10.10. 1 hit.
InterPro	IPR014284. RNA_pol_sigma-70_dom. IPR000838. RNA_pol_sigma70_ECF_CS. IPR007627. RNA_pol_sigma70_r2. IPR013249. RNA_pol_sigma70_r4_t2. IPR014286. RNA_pol_sigma70_RpoE. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF04542. Sigma70_r2. 1 hit. PF08281. Sigma70_r4_2. 1 hit. [Graphical view]
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 1 hit.
TIGRFAMs	TIGR02939. RpoE_Sigma70. 1 hit. TIGR02937. sigma70-ECF. 1 hit.
PROSITE	PS01063. SIGMA70_ECF. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

E1SB94_PANVC

Accession

Primary (citable) accession number: E1SB94

Entry history

Integrated into UniProtKB/TrEMBL:	November 30, 2010
Last sequence update:	November 30, 2010
Last modified:	May 29, 2013
This is version 23 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)