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E1SB44 (E1SB44_PANVC) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 19. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase HAMAP-Rule MF_00687
EC=5.3.1.17 HAMAP-Rule MF_00687
Alternative name(s):
5-keto-4-deoxyuronate isomerase HAMAP-Rule MF_00687
DKI isomerase HAMAP-Rule MF_00687
Gene names
Name:kduI HAMAP-Rule MF_00687 EMBL ADO09322.1
Ordered Locus Names:Pvag_1129 EMBL ADO09322.1
OrganismPantoea vagans (strain C9-1) (Pantoea agglomerans (strain C9-1)) [Complete proteome] [HAMAP] EMBL ADO09322.1
Taxonomic identifier712898 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Pantoea ›

Protein attributes

Sequence length278 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the isomerization of 5-dehydro-4-deoxy-D-glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate By similarity. HAMAP-Rule MF_00687 SAAS SAAS021120

Catalytic activity

5-dehydro-4-deoxy-D-glucuronate = 3-deoxy-D-glycero-2,5-hexodiulosonate. HAMAP-Rule MF_00687 SAAS SAAS021120

Cofactor

Binds 1 zinc ion per subunit By similarity. HAMAP-Rule MF_00687 SAAS SAAS021120

Pathway

Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 4/5. HAMAP-Rule MF_00687 SAAS SAAS021120

Sequence similarities

Belongs to the KduI family. HAMAP-Rule MF_00687

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Metal binding1961Zinc By similarity HAMAP-Rule MF_00687
Metal binding1981Zinc By similarity HAMAP-Rule MF_00687
Metal binding2031Zinc By similarity HAMAP-Rule MF_00687
Metal binding2451Zinc By similarity HAMAP-Rule MF_00687

Sequences

Sequence LengthMass (Da)Tools
E1SB44 [UniParc].

Last modified November 30, 2010. Version 1.
Checksum: AA0CC7F01D794492

FASTA27831,438
        10         20         30         40         50         60 
MDVRQSIHSD HAKQLDTDAL RREFLIETIF SADNYTLTYS HTDRIIIGGV MPVNKPVTIG 

        70         80         90        100        110        120 
DEMGKQLGVS YFLERRELGM INIGGPGLVE VDGKAWEIGH EEALYIGKGA RNLLFRSLNP 

       130        140        150        160        170        180 
AQPAKFYYNS APAHCTFPDK KITLQEAATA TLGDAATANR RTINKFIVPD VLPTCQLTMG 

       190        200        210        220        230        240 
LTRLDEGSLW NTMPCHTHER RMEVYFYFDM SEESAVFHMM GDPQQTRHLM VHNEQAVISP 

       250        260        270 
SWSIHAGVGT QRYTFIWGMV GENQVFDDMD HVKISELR

« Hide

References

[1]"Genome sequence of the biocontrol agent Pantoea vagans strain C9-1."
Smits T.H., Rezzonico F., Kamber T., Goesmann A., Ishimaru C.A., Stockwell V.O., Frey J.E., Duffy B.
J. Bacteriol. 192:6486-6487(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: C9-1 EMBL ADO09322.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002206 Genomic DNA. Translation: ADO09322.1.
RefSeqYP_003930771.1. NC_014562.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADO09322; ADO09322; Pvag_1129.
GeneID9789645.
KEGGpva:Pvag_1129.
PATRIC42418324. VBIPanVag152020_1279.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000124379.
KOK01815.

Enzyme and pathway databases

BioCycPVAG712898:GHQ2-1354-MONOMER.
UniPathwayUPA00545; UER00826.

Family and domain databases

HAMAPMF_00687. KduI.
InterProIPR007045. KduI.
IPR021120. KduI/IolB_isomerase.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamPF04962. KduI. 1 hit.
[Graphical view]
PIRSFPIRSF006625. KduI. 1 hit.
SUPFAMSSF51182. RmlC_like_cupin. 1 hit.
ProtoNetSearch...

Entry information

Entry nameE1SB44_PANVC
AccessionPrimary (citable) accession number: E1SB44
Entry history
Integrated into UniProtKB/TrEMBL: November 30, 2010
Last sequence update: November 30, 2010
Last modified: May 1, 2013
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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