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E1C6M9 (E1C6M9_CHICK) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 28. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length887 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Cadherins are calcium dependent cell adhesion proteins By similarity. RuleBase RU004357

Subcellular location

Membrane; Single-pass type I membrane protein By similarity.

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSGALP00000000855

Sequences

Sequence LengthMass (Da)Tools
E1C6M9 [UniParc].

Last modified June 26, 2013. Version 2.
Checksum: 9BF63BC7389C135A

FASTA88797,755
        10         20         30         40         50         60 
MGRRWGSPAL QRFPVLVLLL LLQVCGQRCD EAAPCQPGFA AETFSFSVPQ DSVAAGRELG 

        70         80         90        100        110        120 
RVSFAACSGR PWAVYVPTDT RFKVNGDGVV STKRPLTLYG RKISFTIYAQ DAMGKRHSAR 

       130        140        150        160        170        180 
VTVGRHRHRR HHHNHHLQDT TPAVLTFPKH DPGFLRRQKR DWVIPPISCL ENHRGPYPMR 

       190        200        210        220        230        240 
LVQIKSNKDK ESKVYYSITG QGADSPPVGI FIIERETGWL EVTEQLDREK IDRYTLLSHA 

       250        260        270        280        290        300 
VSASGQPVED PMEIIITVMD QNDNKPVFIK EVFVGYIEEN AKPGTSVMTV NATDADDAVN 

       310        320        330        340        350        360 
TDNGIVSYSI VSQQPPRPHP QMFTIDPAKG IISVLGTGLD RETTPNYTLI VQATDQEGKG 

       370        380        390        400        410        420 
LSNTATAIIE VTDANDNIPI FNPTMYEGVV EENKPGTEVA RLTVTDQDAP GSPAWQAVYH 

       430        440        450        460        470        480 
IKSGNLDGAF SIITDPSTNN GILKTAKGLD YETKSRYDLV VTVENKVPLS VPITLSTASV 

       490        500        510        520        530        540 
LVTVLDVNEP PVFVPPIKRV GVPEDLPVGQ QVTSYTAQDP DRDMRQKITY RMGSDPAGWL 

       550        560        570        580        590        600 
YIHPENGIVT ATQPLDRESV HAINSTYKAI ILAVDNGIPD TTGTGTLLLL LQDVNDNGPT 

       610        620        630        640        650        660 
PEPRSFEICS RQPEKQILSI VDKDLPPHTY PFKAALEHGS SNNWTVEIRG QDELAMGLKK 

       670        680        690        700        710        720 
ELEPGEYNIF VKLTDSQGKA QVTQVKAQVC ECEGTAKNCE RRSYIVGGLG VPAILGILGG 

       730        740        750        760        770        780 
ILALLILLLL LLLFARRRKV EKEPLLPPED DMRDNVYNYD EEGGGEEDQD YDLSQLHRGL 

       790        800        810        820        830        840 
DARPEVIRND VAPPLMAAPQ YRPRPANPDE IGNFIDENLK AADTDPTAPP YDSLLVFDYE 

       850        860        870        880 
GGGSEATSLS SLNSSASDQD QDYDYLNEWG NRFKKLAELY GGGEDDE 

« Hide

References

« Hide 'large scale' references
[1]"Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution."
International Chicken Genome Sequencing Consortium
Hillier L.W., Miller W., Birney E., Warren W., Hardison R.C., Ponting C.P., Bork P., Burt D.W., Groenen M.A.M., Delany M.E., Dodgson J.B., Chinwalla A.T., Cliften P.F., Clifton S.W., Delehaunty K.D., Fronick C., Fulton R.S., Graves T.A. expand/collapse author list , Kremitzki C., Layman D., Magrini V., McPherson J.D., Miner T.L., Minx P., Nash W.E., Nhan M.N., Nelson J.O., Oddy L.G., Pohl C.S., Randall-Maher J., Smith S.M., Wallis J.W., Yang S.-P., Romanov M.N., Rondelli C.M., Paton B., Smith J., Morrice D., Daniels L., Tempest H.G., Robertson L., Masabanda J.S., Griffin D.K., Vignal A., Fillon V., Jacobbson L., Kerje S., Andersson L., Crooijmans R.P., Aerts J., van der Poel J.J., Ellegren H., Caldwell R.B., Hubbard S.J., Grafham D.V., Kierzek A.M., McLaren S.R., Overton I.M., Arakawa H., Beattie K.J., Bezzubov Y., Boardman P.E., Bonfield J.K., Croning M.D.R., Davies R.M., Francis M.D., Humphray S.J., Scott C.E., Taylor R.G., Tickle C., Brown W.R.A., Rogers J., Buerstedde J.-M., Wilson S.A., Stubbs L., Ovcharenko I., Gordon L., Lucas S., Miller M.M., Inoko H., Shiina T., Kaufman J., Salomonsen J., Skjoedt K., Wong G.K.-S., Wang J., Liu B., Wang J., Yu J., Yang H., Nefedov M., Koriabine M., Dejong P.J., Goodstadt L., Webber C., Dickens N.J., Letunic I., Suyama M., Torrents D., von Mering C., Zdobnov E.M., Makova K., Nekrutenko A., Elnitski L., Eswara P., King D.C., Yang S.-P., Tyekucheva S., Radakrishnan A., Harris R.S., Chiaromonte F., Taylor J., He J., Rijnkels M., Griffiths-Jones S., Ureta-Vidal A., Hoffman M.M., Severin J., Searle S.M.J., Law A.S., Speed D., Waddington D., Cheng Z., Tuzun E., Eichler E., Bao Z., Flicek P., Shteynberg D.D., Brent M.R., Bye J.M., Huckle E.J., Chatterji S., Dewey C., Pachter L., Kouranov A., Mourelatos Z., Hatzigeorgiou A.G., Paterson A.H., Ivarie R., Brandstrom M., Axelsson E., Backstrom N., Berlin S., Webster M.T., Pourquie O., Reymond A., Ucla C., Antonarakis S.E., Long M., Emerson J.J., Betran E., Dupanloup I., Kaessmann H., Hinrichs A.S., Bejerano G., Furey T.S., Harte R.A., Raney B., Siepel A., Kent W.J., Haussler D., Eyras E., Castelo R., Abril J.F., Castellano S., Camara F., Parra G., Guigo R., Bourque G., Tesler G., Pevzner P.A., Smit A., Fulton L.A., Mardis E.R., Wilson R.K.
Nature 432:695-716(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Red jungle fowl Ensembl ENSGALP00000000855.
[2]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Red jungle fowl Ensembl ENSGALP00000000855.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AADN03006273 Genomic DNA. No translation available.
RefSeqNP_001034347.2. NM_001039258.2.
UniGeneGga.2982.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSGALT00000000857; ENSGALP00000000855; ENSGALG00000000608.
GeneID415860.
KEGGgga:415860.

Organism-specific databases

CTD999.

Phylogenomic databases

GeneTreeENSGT00740000115112.
KOK05689.
OrthoDBEOG7PS1DS.
TreeFamTF316817.

Family and domain databases

Gene3D2.60.40.60. 6 hits.
4.10.900.10. 1 hit.
InterProIPR002126. Cadherin.
IPR015919. Cadherin-like.
IPR020894. Cadherin_CS.
IPR000233. Cadherin_cytoplasmic-dom.
IPR014868. Cadherin_pro_dom.
IPR027397. Catenin_binding_dom.
[Graphical view]
PfamPF00028. Cadherin. 5 hits.
PF01049. Cadherin_C. 1 hit.
PF08758. Cadherin_pro. 1 hit.
[Graphical view]
PRINTSPR00205. CADHERIN.
SMARTSM00112. CA. 4 hits.
SM01055. Cadherin_pro. 1 hit.
[Graphical view]
SUPFAMSSF49313. SSF49313. 6 hits.
PROSITEPS00232. CADHERIN_1. 3 hits.
PS50268. CADHERIN_2. 5 hits.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE1C6M9_CHICK
AccessionPrimary (citable) accession number: E1C6M9
Entry history
Integrated into UniProtKB/TrEMBL: November 2, 2010
Last sequence update: June 26, 2013
Last modified: February 19, 2014
This is version 28 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)