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E1BDU6 (E1BDU6_BOVIN) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 28. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein attributes

Sequence length665 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the ABC transporter superfamily. RuleBase RU000684

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSBTAP00000028342

Ontologies

Keywords
   LigandATP-binding RuleBase RU003299
Nucleotide-binding
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processamyloid precursor protein catabolic process

Inferred from electronic annotation. Source: Ensembl

cholesterol efflux

Inferred from electronic annotation. Source: Ensembl

cholesterol homeostasis

Inferred from electronic annotation. Source: Ensembl

cholesterol metabolic process

Inferred from electronic annotation. Source: Ensembl

high-density lipoprotein particle remodeling

Inferred from electronic annotation. Source: Ensembl

intracellular cholesterol transport

Inferred from electronic annotation. Source: Ensembl

low-density lipoprotein particle remodeling

Inferred from electronic annotation. Source: Ensembl

negative regulation of lipid storage

Inferred from electronic annotation. Source: Ensembl

phospholipid efflux

Inferred from electronic annotation. Source: Ensembl

phospholipid homeostasis

Inferred from electronic annotation. Source: Ensembl

positive regulation of cholesterol biosynthetic process

Inferred from electronic annotation. Source: Ensembl

positive regulation of cholesterol efflux

Inferred from electronic annotation. Source: Ensembl

regulation of cholesterol esterification

Inferred from electronic annotation. Source: Ensembl

regulation of transcription, DNA-templated

Inferred from electronic annotation. Source: Ensembl

response to high density lipoprotein particle

Inferred from electronic annotation. Source: Ensembl

response to lipid

Inferred from electronic annotation. Source: Ensembl

reverse cholesterol transport

Inferred from electronic annotation. Source: Ensembl

   Cellular_componentGolgi apparatus

Inferred from electronic annotation. Source: Ensembl

external side of plasma membrane

Inferred from electronic annotation. Source: Ensembl

mitochondrion

Inferred from electronic annotation. Source: Ensembl

recycling endosome

Inferred from electronic annotation. Source: Ensembl

   Molecular_functionADP binding

Inferred from electronic annotation. Source: Ensembl

ATP binding

Inferred from electronic annotation. Source: UniProtKB-KW

cholesterol transporter activity

Inferred from electronic annotation. Source: Ensembl

glycoprotein transporter activity

Inferred from electronic annotation. Source: Ensembl

phospholipid transporter activity

Inferred from electronic annotation. Source: Ensembl

sterol-transporting ATPase activity

Inferred from electronic annotation. Source: Ensembl

toxin transporter activity

Inferred from electronic annotation. Source: Ensembl

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
E1BDU6 [UniParc].

Last modified November 2, 2010. Version 1.
Checksum: 710F7956734775FB

FASTA66574,142
        10         20         30         40         50         60 
MACLMATFSV GTAMNGSSGM TEPKSVCVSV DEVVFSNRDR DTVEKELLNG HLKKEDNNLT 

        70         80         90        100        110        120 
EAQRLSSLPR RAAVNIEFKD LSYSVSEGPW WRKKGYKTLL KGISGKFNSG ELVAIMGPSG 

       130        140        150        160        170        180 
AGKSTLMNIL AGYRETGMKG EVLINGLPRD LRCFRKVSCY IMQDDLLLPH LTVQEAMMVS 

       190        200        210        220        230        240 
AHLKLQEKDE GRREMVKEIL TALGLLSCAN TRTGSLSGGQ RKRLAIALEL VNNPPVMFFD 

       250        260        270        280        290        300 
EPTSGLDSAS CFQVVSLMKG LAQGGRSIIC TIHQPSAKLF ELFDQLYVLS QGQCVYRGKV 

       310        320        330        340        350        360 
SNLVPYLRDL GLNCPTYHNP ADFVMEVASG EYGDQNGRLV RAVWEGKCDS DCRREPGGDA 

       370        380        390        400        410        420 
EVNPFIWHRP SEEDSTSMEG CHSFSASCLT QFCILFKRTF LSIMRDSVLT HLRITSHIGI 

       430        440        450        460        470        480 
GLLIGLLYLG IGNEAKKVLS NSGFLFFSML FLMFAALMPT VLTFPLEMSV FLREHLNYWY 

       490        500        510        520        530        540 
SLKAYYLAKT MADVPFQIMF PVAYCSIVYW MTSQPSDAVR FVLFAALGTM TSLVAQSLGL 

       550        560        570        580        590        600 
LIGAASTSLQ VATFVGPVTA IPVLLFSGFF VSFDTIPTYL QWMSYVSYVR YGFEGVILSI 

       610        620        630        640        650        660 
YGLDREDLHC NTNETCHFQK SEAILRELDV ENAKLYLDFI VLGIFFISLR LIAYLVLRYK 


IRAER 

« Hide

References

« Hide 'large scale' references
[1]"A whole-genome assembly of the domestic cow, Bos taurus."
Zimin A.V., Delcher A.L., Florea L., Kelley D.R., Schatz M.C., Puiu D., Hanrahan F., Pertea G., Van Tassell C.P., Sonstegard T.S., Marcais G., Roberts M., Subramanian P., Yorke J.A., Salzberg S.L.
Genome Biol. 10:R42.01-R42.10(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Hereford Ensembl ENSBTAP00000028342.
[2]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Hereford Ensembl ENSBTAP00000028342.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
DAAA02003260 Genomic DNA. No translation available.
RefSeqXP_005202056.1. XM_005201999.1.
UniGeneBt.29337.

3D structure databases

ProteinModelPortalE1BDU6.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSBTAT00000028342; ENSBTAP00000028342; ENSBTAG00000021272.
GeneID510745.
KEGGbta:510745.

Organism-specific databases

CTD9619.

Phylogenomic databases

GeneTreeENSGT00740000114855.
KOK05679.
OMALECANTR.
OrthoDBEOG7KWSGT.
TreeFamTF105210.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
InterProIPR003593. AAA+_ATPase.
IPR013525. ABC_2_trans.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR027417. P-loop_NTPase.
IPR005284. Pigment_permease.
[Graphical view]
PfamPF01061. ABC2_membrane. 1 hit.
PF00005. ABC_tran. 1 hit.
[Graphical view]
SMARTSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMSSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00955. 3a01204. 1 hit.
PROSITEPS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio20869597.

Entry information

Entry nameE1BDU6_BOVIN
AccessionPrimary (citable) accession number: E1BDU6
Entry history
Integrated into UniProtKB/TrEMBL: November 2, 2010
Last sequence update: November 2, 2010
Last modified: April 16, 2014
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)