E1BDJ1 (E1BDJ1_BOVIN) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Uncharacterized protein Ensembl ENSBTAP00000009683

Gene names

Name:

XPC Ensembl ENSBTAP00000009683

Organism

Bos taurus (Bovine) [Reference proteome] Ensembl ENSBTAP00000009683

Taxonomic identifier

9913 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Laurasiatheria › Cetartiodactyla › Ruminantia › Pecora › Bovidae › Bovinae › Bos

Protein attributes

Sequence length	932 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSBTAP00000009683

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	intra-S DNA damage checkpoint Inferred from electronic annotation. Source: Compara nucleotide-excision repair, DNA damage recognition Inferred from electronic annotation. Source: Compara response to UV-B Inferred from electronic annotation. Source: Compara
Cellular_component	XPC complex Inferred from electronic annotation. Source: Compara cytoplasm Inferred from electronic annotation. Source: Compara
Molecular_function	damaged DNA binding Inferred from electronic annotation. Source: Compara single-stranded DNA binding Inferred from electronic annotation. Source: Compara
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	E1BDJ1 [UniParc]. Last modified November 2, 2010. Version 1. Checksum: 166558BE76E17DAD	FASTA	932	103,114
	10 20 30 40 50 60 MARKRAAGRG PRGQTAKGET KARRKEEEAD VFEDEKPLKK SPPTKVSRGK RKRGCGDAGG 70 80 90 100 110 120 SADGPVRRKA AKVSVKSEEP QVIKDEALSD GEDFRDLPSA RRKGQPPERE AAADKGSCEG 130 140 150 160 170 180 DDEEDSEEDW EEVEEVSEPV PGDVGESGAF SASALPVKPV EIEIETPEQV KARERSEKIK 190 200 210 220 230 240 MEFETYLRRM MKRFSKEVHE DTHKVHLLCL LANGFYRNSI CNQPDLQAIG LSIIPTRFTK 250 260 270 280 290 300 VPPRDVDVSY LSNLVKWFIG TFTVNAELST NEQDGLQTTL ERRFAIYSAR DDEELVHIFL 310 320 330 340 350 360 LLLRALHLPT RLVLSLQPVP LKLSAEKGKK PCKERSTEAP GGSSEAASHA PGKPSGGSGG 370 380 390 400 410 420 EHASSGGAGG ARARGKGGKA AAGRRPRGES PSSGEDAGQA RGQRRGTQRR AQARRRRVAA 430 440 450 460 470 480 KVSYKEESGS DAASSGSDFE PSSEDSCRPS DEDSEPGLPR PRRAPAPQRT KAGSKSRSKS 490 500 510 520 530 540 QQGSRGLRPG FVEASASAAG SKRKGGKKPS GDGGKAGRQG AAGVDQWLEV FLEREEKWVC 550 560 570 580 590 600 VDCVHGVVGQ PLTCYQYATK PVTYVVGIDG AGCVRDVTQR YDPAWLTATR KSRVDAAWWA 610 620 630 640 650 660 ETLRPYRSPL VDREQREDQE FQAKHLDQPL PTVIGTYKNH PLYALKRHLL KYEAIYPETA 670 680 690 700 710 720 AVLGYCRGEA VYSRDCVHTL HSRDTWLKQA RVVRLGEVPY KMVKGYSNRA RRARQAEPQL 730 740 750 760 770 780 HDYNDLGLFG RWQTEEYQPP VAVDGKVPRN EFGNVYLFLP SMMPVGCVQL NLPNLHRVAR 790 800 810 820 830 840 KLNIDCAQAV TGFDFHKGYC HPITDGYVVC EEYRDVLLTA WENEQALIEK KEKEKREKRA 850 860 870 880 890 900 LGNWKLLVKG LLIRERLKLR YGAQSEAAAP HTDVGGGLSS DEEEGTSSQA EAARILAASW 910 920 930 PQNREAEKPK CPRKTRREKK EAAAHLFPFE KL

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"A whole-genome assembly of the domestic cow, Bos taurus." Zimin A.V., Delcher A.L., Florea L., Kelley D.R., Schatz M.C., Puiu D., Hanrahan F., Pertea G., Van Tassell C.P., Sonstegard T.S., Marcais G., Roberts M., Subramanian P., Yorke J.A., Salzberg S.L. Genome Biol. 10:R42-R42(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Hereford Ensembl ENSBTAP00000009683.
[2]	Ensembl Submitted (JUL-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: Hereford Ensembl ENSBTAP00000009683.

Cross-references

Sequence databases
EMBL GenBank DDBJ	DAAA02054616 Genomic DNA. No translation available.
IPI	IPI00702830.
RefSeq	NP_001192837.1. NM_001205908.1.
UniGene	Bt.45276.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSBTAT00000009683; ENSBTAP00000009683; ENSBTAG00000007362.
GeneID	524274.
KEGG	bta:524274.
Organism-specific databases
CTD	7508.
Phylogenomic databases
GeneTree	ENSGT00390000005194.
KO	K10838.
OMA	MKRFNKE.
Family and domain databases
InterPro	IPR004583. DNA_repair_Rad4. IPR018026. DNA_repair_Rad4_subgr. IPR018325. Rad4/PNGase_transGLS-fold. IPR018326. Rad4_beta-hairpin_dom1. IPR018327. Rad4_beta-hairpin_dom2. IPR018328. Rad4_beta-hairpin_dom3. [Graphical view]
PANTHER	PTHR12135. PTHR12135. 1 hit.
Pfam	PF10403. BHD_1. 1 hit. PF10404. BHD_2. 1 hit. PF10405. BHD_3. 1 hit. PF03835. Rad4. 1 hit. [Graphical view]
SMART	SM01030. BHD_1. 1 hit. SM01031. BHD_2. 1 hit. SM01032. BHD_3. 1 hit. [Graphical view]
TIGRFAMs	TIGR00605. rad4. 1 hit.
ProtoNet	Search...
Other
NextBio	20873931.

Entry information

Entry name

E1BDJ1_BOVIN

Accession

Primary (citable) accession number: E1BDJ1

Entry history

Integrated into UniProtKB/TrEMBL:	November 2, 2010
Last sequence update:	November 2, 2010
Last modified:	April 3, 2013
This is version 19 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)