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E0X767 (E0X767_9ZZZZ) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 12. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=3.1.26.4 EMBL ACV72189.1
Organismuncultured organism EMBL ACV72189.1
Taxonomic identifier155900 [NCBI]
Taxonomic lineageunclassified sequencesenvironmental samples

Protein attributes

Sequence length140 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Ontologies

Keywords
   Molecular functionHydrolase EMBL ACV72189.1
   Technical term3D-structure PDB 3U3G PDB 4H8K
Gene Ontology (GO)
   Molecular_functionRNA-DNA hybrid ribonuclease activity

Inferred from electronic annotation. Source: UniProtKB-EC

nucleic acid binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
E0X767 [UniParc].

Last modified November 2, 2010. Version 1.
Checksum: 814C50077858E5C3

FASTA14015,611
        10         20         30         40         50         60 
MNKIIIYTDG GARGNPGPAG IGVVITDEKG NTLHESSAYI GETTNNVAEY EALIRALEDL 

        70         80         90        100        110        120 
QMFGDKLVDM EVEVRMDSEL IVRQMQGVYK VKEPTLKEKF AKIAHIKMER VPNLVFVHIP 

       130        140 
REKNARADEL VNEAIDKALS 

« Hide

References

[1]"Cloning of the RNase H genes from a metagenomic DNA library: identification of a new type 1 RNase H without a typical active-site motif."
Kanaya E., Sakabe T., Nguyen N.T., Koikeda S., Koga Y., Takano K., Kanaya S.
J. Appl. Microbiol. 109:974-983(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[2]"Activity, stability, and structure of metagenome-derived LC11-RNase H1, a homolog of Sulfolobus tokodaii RNase H1."
Nguyen T.N., Angkawidjaja C., Kanaya E., Koga Y., Takano K., Kanaya S.
Protein Sci. 21:553-561(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (1.40 ANGSTROMS).
[3]"Crystal structure of metagenome-derived LC11-RNase H1 in complex with RNA/DNA hybrid."
Nguyen T.N., You D.J., Matsumoto H., Kanaya E., Koga Y., Kanaya S.
J. Struct. Biol. 182:144-154(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.30 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
GQ855311 Genomic DNA. Translation: ACV72189.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3U3GX-ray1.40A/B/C/D1-140[»]
4H8KX-ray2.30A/B1-140[»]
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

Gene3D3.30.420.10. 1 hit.
InterProIPR012337. RNaseH-like_dom.
IPR002156. RNaseH_domain.
[Graphical view]
PfamPF00075. RNase_H. 1 hit.
[Graphical view]
SUPFAMSSF53098. SSF53098. 1 hit.
PROSITEPS50879. RNASE_H. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE0X767_9ZZZZ
AccessionPrimary (citable) accession number: E0X767
Entry history
Integrated into UniProtKB/TrEMBL: November 2, 2010
Last sequence update: November 2, 2010
Last modified: April 16, 2014
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)