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Protein
Submitted name:

DNA ligase

Gene

PB2503_01927

Organism
Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPBER314260:GI0G-293-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported
Gene namesi
Ordered Locus Names:PB2503_01927Imported
OrganismiParvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087)Imported
Taxonomic identifieri314260 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaParvularculalesParvularculaceaeParvularcula
ProteomesiUP000001302: Chromosome

Structurei

3D structure databases

ProteinModelPortaliE0TBX1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000036007.
KOiK01971.
OMAiGQPYPFF.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E0TBX1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MNRFAALLES LIYTPSRNGK IRLLTEYFAS TPDPDRGWAV AAMTRDLDIK
60 70 80 90 100
SVKPAMIKTL VEERVDPVLF GLSYDYVGDL AETVSLIWPG QEQRNYIPTL
110 120 130 140 150
TDIVETLGEI SRQEAPSVVA DWFDALSPPA RWALIKLITG GLRIGVAARL
160 170 180 190 200
VKLALAEFGG QPVQDIEELW HGLEAPYRDL FAWLEGRSPR PAQAAKAPFR
210 220 230 240 250
PVMLAHPVEE KDQPKIDLTE MMAEWKWDGI RVQTVVEDGV KRLYTRTGDD
260 270 280 290 300
ISGTFPDLLA SLNEEVAIDG ELLIFDPAIT DRFVVRPFND LQQRLNRKVV
310 320 330 340 350
SKKLLEESPA FIRAYDLLWA RGEDLRPLPF SARRAHLEEI SQQGAFPRLD
360 370 380 390 400
LSPVIPLSSW EALADLRANP PEDAIEGVML KRADAPYVPG RPKGQWWKWK
410 420 430 440 450
REPFLVDAVL MYAQRGHGKR SSFYSDYTFG VWRTGKDGEE LVPVGKAYHG
460 470 480 490 500
FTDLELKKID KFVRDHTIDR FGPVRAVRAT REEGLVFEVA FEGLQRSSRH
510 520 530
KSGIAMRFPR INRLRWDKPT AEADRLETLE AMLPATA
Length:537
Mass (Da):60,868
Last modified:November 2, 2010 - v1
Checksum:i22B3EEDC55E3471D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002156 Genomic DNA. Translation: ADM08464.1.
RefSeqiWP_013299438.1. NC_014414.1.
YP_003853605.1. NC_014414.1.

Genome annotation databases

EnsemblBacteriaiADM08464; ADM08464; PB2503_01927.
GeneIDi9708629.
KEGGipbr:PB2503_01927.
PATRICi42424691. VBIParBer119301_0291.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002156 Genomic DNA. Translation: ADM08464.1.
RefSeqiWP_013299438.1. NC_014414.1.
YP_003853605.1. NC_014414.1.

3D structure databases

ProteinModelPortaliE0TBX1.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADM08464; ADM08464; PB2503_01927.
GeneIDi9708629.
KEGGipbr:PB2503_01927.
PATRICi42424691. VBIParBer119301_0291.

Phylogenomic databases

HOGENOMiHOG000036007.
KOiK01971.
OMAiGQPYPFF.

Enzyme and pathway databases

BioCyciPBER314260:GI0G-293-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of Parvularcula bermudensis HTCC2503."
    Kang D.-M., Oh H.-M., Cho J.-C.
    Submitted (AUG-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-594 / HTCC2503 / KCTC 12087Imported.

Entry informationi

Entry nameiE0TBX1_PARBH
AccessioniPrimary (citable) accession number: E0TBX1
Entry historyi
Integrated into UniProtKB/TrEMBL: November 2, 2010
Last sequence update: November 2, 2010
Last modified: January 7, 2015
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.