E0TBX1 (E0TBX1_PARBH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase EMBL ADM08464.1

Gene names

Ordered Locus Names:

PB2503_01927 EMBL ADM08464.1

Organism

Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) [Complete proteome] [HAMAP]

Taxonomic identifier

314260 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Parvularculales › Parvularculaceae › Parvularcula › Parvularcula bermudensis

Protein attributes

Sequence length	537 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ADM08464.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	E0TBX1 [UniParc]. Last modified November 2, 2010. Version 1. Checksum: 22B3EEDC55E3471D	FASTA	537	60,868
	10 20 30 40 50 60 MNRFAALLES LIYTPSRNGK IRLLTEYFAS TPDPDRGWAV AAMTRDLDIK SVKPAMIKTL 70 80 90 100 110 120 VEERVDPVLF GLSYDYVGDL AETVSLIWPG QEQRNYIPTL TDIVETLGEI SRQEAPSVVA 130 140 150 160 170 180 DWFDALSPPA RWALIKLITG GLRIGVAARL VKLALAEFGG QPVQDIEELW HGLEAPYRDL 190 200 210 220 230 240 FAWLEGRSPR PAQAAKAPFR PVMLAHPVEE KDQPKIDLTE MMAEWKWDGI RVQTVVEDGV 250 260 270 280 290 300 KRLYTRTGDD ISGTFPDLLA SLNEEVAIDG ELLIFDPAIT DRFVVRPFND LQQRLNRKVV 310 320 330 340 350 360 SKKLLEESPA FIRAYDLLWA RGEDLRPLPF SARRAHLEEI SQQGAFPRLD LSPVIPLSSW 370 380 390 400 410 420 EALADLRANP PEDAIEGVML KRADAPYVPG RPKGQWWKWK REPFLVDAVL MYAQRGHGKR 430 440 450 460 470 480 SSFYSDYTFG VWRTGKDGEE LVPVGKAYHG FTDLELKKID KFVRDHTIDR FGPVRAVRAT 490 500 510 520 530 REEGLVFEVA FEGLQRSSRH KSGIAMRFPR INRLRWDKPT AEADRLETLE AMLPATA

References

[1]	"Genome sequence of Parvularcula bermudensis HTCC2503." Kang D.-M., Oh H.-M., Cho J.-C. Submitted (AUG-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-594 / HTCC2503 / KCTC 12087.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002156 Genomic DNA. Translation: ADM08464.1.
RefSeq	YP_003853605.1. NC_014414.1.
3D structure databases
ProteinModelPortal	E0TBX1.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADM08464; ADM08464; PB2503_01927.
GeneID	9708629.
KEGG	pbr:PB2503_01927.
PATRIC	42424691. VBIParBer119301_0291.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000036007.
KO	K01971.
Enzyme and pathway databases
BioCyc	PBER314260:GI0G-284-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

E0TBX1_PARBH

Accession

Primary (citable) accession number: E0TBX1

Entry history

Integrated into UniProtKB/TrEMBL:	November 2, 2010
Last sequence update:	November 2, 2010
Last modified:	May 1, 2013
This is version 18 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)