Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

E0TBX1

- E0TBX1_PARBH

UniProt

E0TBX1 - E0TBX1_PARBH

Protein
Submitted name:

DNA ligase

Gene

PB2503_01927

Organism
Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 23 (01 Oct 2014)
      Sequence version 1 (02 Nov 2010)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciPBER314260:GI0G-293-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligaseImported
    Gene namesi
    Ordered Locus Names:PB2503_01927Imported
    OrganismiParvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087)Imported
    Taxonomic identifieri314260 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaParvularculalesParvularculaceaeParvularcula
    ProteomesiUP000001302: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliE0TBX1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000036007.
    KOiK01971.
    OMAiNRHKSGV.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    E0TBX1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MNRFAALLES LIYTPSRNGK IRLLTEYFAS TPDPDRGWAV AAMTRDLDIK    50
    SVKPAMIKTL VEERVDPVLF GLSYDYVGDL AETVSLIWPG QEQRNYIPTL 100
    TDIVETLGEI SRQEAPSVVA DWFDALSPPA RWALIKLITG GLRIGVAARL 150
    VKLALAEFGG QPVQDIEELW HGLEAPYRDL FAWLEGRSPR PAQAAKAPFR 200
    PVMLAHPVEE KDQPKIDLTE MMAEWKWDGI RVQTVVEDGV KRLYTRTGDD 250
    ISGTFPDLLA SLNEEVAIDG ELLIFDPAIT DRFVVRPFND LQQRLNRKVV 300
    SKKLLEESPA FIRAYDLLWA RGEDLRPLPF SARRAHLEEI SQQGAFPRLD 350
    LSPVIPLSSW EALADLRANP PEDAIEGVML KRADAPYVPG RPKGQWWKWK 400
    REPFLVDAVL MYAQRGHGKR SSFYSDYTFG VWRTGKDGEE LVPVGKAYHG 450
    FTDLELKKID KFVRDHTIDR FGPVRAVRAT REEGLVFEVA FEGLQRSSRH 500
    KSGIAMRFPR INRLRWDKPT AEADRLETLE AMLPATA 537
    Length:537
    Mass (Da):60,868
    Last modified:November 2, 2010 - v1
    Checksum:i22B3EEDC55E3471D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002156 Genomic DNA. Translation: ADM08464.1.
    RefSeqiWP_013299438.1. NC_014414.1.
    YP_003853605.1. NC_014414.1.

    Genome annotation databases

    EnsemblBacteriaiADM08464; ADM08464; PB2503_01927.
    GeneIDi9708629.
    KEGGipbr:PB2503_01927.
    PATRICi42424691. VBIParBer119301_0291.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002156 Genomic DNA. Translation: ADM08464.1 .
    RefSeqi WP_013299438.1. NC_014414.1.
    YP_003853605.1. NC_014414.1.

    3D structure databases

    ProteinModelPortali E0TBX1.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADM08464 ; ADM08464 ; PB2503_01927 .
    GeneIDi 9708629.
    KEGGi pbr:PB2503_01927.
    PATRICi 42424691. VBIParBer119301_0291.

    Phylogenomic databases

    HOGENOMi HOG000036007.
    KOi K01971.
    OMAi NRHKSGV.

    Enzyme and pathway databases

    BioCyci PBER314260:GI0G-293-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of Parvularcula bermudensis HTCC2503."
      Kang D.-M., Oh H.-M., Cho J.-C.
      Submitted (AUG-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC BAA-594 / HTCC2503 / KCTC 12087Imported.

    Entry informationi

    Entry nameiE0TBX1_PARBH
    AccessioniPrimary (citable) accession number: E0TBX1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 2, 2010
    Last sequence update: November 2, 2010
    Last modified: October 1, 2014
    This is version 23 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3