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E0TBX1

- E0TBX1_PARBH

UniProt

E0TBX1 - E0TBX1_PARBH

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Protein
Submitted name: DNA ligase
Gene
PB2503_01927
Organism
Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPBER314260:GI0G-293-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported
Gene namesi
Ordered Locus Names:PB2503_01927Imported
OrganismiParvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087)Imported
Taxonomic identifieri314260 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaParvularculalesParvularculaceaeParvularcula
ProteomesiUP000001302: Chromosome

Structurei

3D structure databases

ProteinModelPortaliE0TBX1.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000036007.
KOiK01971.
OMAiNRHKSGV.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E0TBX1-1 [UniParc]FASTAAdd to Basket

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MNRFAALLES LIYTPSRNGK IRLLTEYFAS TPDPDRGWAV AAMTRDLDIK    50
SVKPAMIKTL VEERVDPVLF GLSYDYVGDL AETVSLIWPG QEQRNYIPTL 100
TDIVETLGEI SRQEAPSVVA DWFDALSPPA RWALIKLITG GLRIGVAARL 150
VKLALAEFGG QPVQDIEELW HGLEAPYRDL FAWLEGRSPR PAQAAKAPFR 200
PVMLAHPVEE KDQPKIDLTE MMAEWKWDGI RVQTVVEDGV KRLYTRTGDD 250
ISGTFPDLLA SLNEEVAIDG ELLIFDPAIT DRFVVRPFND LQQRLNRKVV 300
SKKLLEESPA FIRAYDLLWA RGEDLRPLPF SARRAHLEEI SQQGAFPRLD 350
LSPVIPLSSW EALADLRANP PEDAIEGVML KRADAPYVPG RPKGQWWKWK 400
REPFLVDAVL MYAQRGHGKR SSFYSDYTFG VWRTGKDGEE LVPVGKAYHG 450
FTDLELKKID KFVRDHTIDR FGPVRAVRAT REEGLVFEVA FEGLQRSSRH 500
KSGIAMRFPR INRLRWDKPT AEADRLETLE AMLPATA 537
Length:537
Mass (Da):60,868
Last modified:November 2, 2010 - v1
Checksum:i22B3EEDC55E3471D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002156 Genomic DNA. Translation: ADM08464.1.
RefSeqiWP_013299438.1. NC_014414.1.
YP_003853605.1. NC_014414.1.

Genome annotation databases

EnsemblBacteriaiADM08464; ADM08464; PB2503_01927.
GeneIDi9708629.
KEGGipbr:PB2503_01927.
PATRICi42424691. VBIParBer119301_0291.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002156 Genomic DNA. Translation: ADM08464.1 .
RefSeqi WP_013299438.1. NC_014414.1.
YP_003853605.1. NC_014414.1.

3D structure databases

ProteinModelPortali E0TBX1.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADM08464 ; ADM08464 ; PB2503_01927 .
GeneIDi 9708629.
KEGGi pbr:PB2503_01927.
PATRICi 42424691. VBIParBer119301_0291.

Phylogenomic databases

HOGENOMi HOG000036007.
KOi K01971.
OMAi NRHKSGV.

Enzyme and pathway databases

BioCyci PBER314260:GI0G-293-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of Parvularcula bermudensis HTCC2503."
    Kang D.-M., Oh H.-M., Cho J.-C.
    Submitted (AUG-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-594 / HTCC2503 / KCTC 12087.

Entry informationi

Entry nameiE0TBX1_PARBH
AccessioniPrimary (citable) accession number: E0TBX1
Entry historyi
Integrated into UniProtKB/TrEMBL: November 2, 2010
Last sequence update: November 2, 2010
Last modified: September 3, 2014
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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