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Protein
Submitted name:

Gamma-aminobutyric-acid receptor subunit beta-1

Gene

Dda3937_00520

Organism
Dickeya dadantii (strain 3937) (Erwinia chrysanthemi (strain 3937))
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Keywordsi

Molecular functionReceptorImported

Enzyme and pathway databases

BioCyciDDAD198628:GHFQ-4232-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Gamma-aminobutyric-acid receptor subunit beta-1Imported
Gene namesi
Ordered Locus Names:Dda3937_00520Imported
OrganismiDickeya dadantii (strain 3937) (Erwinia chrysanthemi (strain 3937))Imported
Taxonomic identifieri198628 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesPectobacteriaceaeDickeya
Proteomesi
  • UP000006859 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei224 – 245HelicalSequence analysisAdd BLAST22
Transmembranei257 – 274HelicalSequence analysisAdd BLAST18
Transmembranei286 – 303HelicalSequence analysisAdd BLAST18
Transmembranei323 – 342HelicalSequence analysisAdd BLAST20

GO - Cellular componenti

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 21Sequence analysisAdd BLAST21
ChainiPRO_500314038922 – 343Sequence analysisAdd BLAST322

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
itself4EBI-15977988,EBI-15977988

GO - Molecular functioni

  • identical protein binding Source: IntAct

Protein-protein interaction databases

DIPiDIP-60036N.
STRINGi198628.Dda3937_00520.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2YN6X-ray3.31A/B/C/D/E22-343[»]
3RQUX-ray3.09A/B/C/D/E/F/G/H/I/J22-343[»]
3RQWX-ray2.91A/B/C/D/E/F/G/H/I/J22-343[»]
3UQ4X-ray3.50A/B/C/D/E/F/G/H/I/J22-343[»]
3UQ5X-ray4.20A/B/C/D/E/F/G/H/I/J22-343[»]
3UQ7X-ray3.80A/B/C/D/E/F/G/H/I/J22-343[»]
4Z90X-ray3.00A/B/C/D/E/F/G/H/I/J22-343[»]
4Z91X-ray3.39A/B/C/D/E/F/G/H/I/J22-343[»]
5HEJX-ray3.50A/B/C/D/E/F/G/H/I/J22-343[»]
5HEOX-ray3.30A/B/C/D/E/F/G/H/I/J22-343[»]
5HEUX-ray3.20A/B/C/D/E/F/G/H/I/J22-343[»]
5HEWX-ray4.50A/B/C/D/E/F/G/H/I/J22-343[»]
5LG3X-ray3.57A/B/C/D/E/F/G/H/I/J32-338[»]
5SXUX-ray3.10A/B/C/D/E/F/G/H/I/J22-343[»]
SMRiE0SJQ4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini28 – 217Neur_chan_LBDInterPro annotationAdd BLAST190

Keywords - Domaini

SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG4105TA1. Bacteria.
ENOG4111U8M. LUCA.
HOGENOMiHOG000157201.
OMAiFRTTFCK.
OrthoDBiPOG091H13WE.

Family and domain databases

Gene3Di1.20.58.390. 1 hit.
2.70.170.10. 1 hit.
InterProiView protein in InterPro
IPR006202. Neur_chan_lig-bd.
IPR036734. Neur_chan_lig-bd_sf.
IPR006201. Neur_channel.
IPR036719. Neuro-gated_channel_TM_sf.
PANTHERiPTHR18945. PTHR18945. 1 hit.
PfamiView protein in Pfam
PF02931. Neur_chan_LBD. 1 hit.
SUPFAMiSSF63712. SSF63712. 1 hit.
SSF90112. SSF90112. 1 hit.

Sequencei

Sequence statusi: Complete.

E0SJQ4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRILWSCCGL VLLLLGLPAW SAPADNAADA RPVDVSVSIF INKIYGVNTL
60 70 80 90 100
EQTYKVDGYI VAQWTGKPRK TPGDKPLIVE NTQIERWINN GLWVPALEFI
110 120 130 140 150
NVVGSPDTGN KRLMLFPDGR VIYNARFLGS FSNDMDFRLF PFDRQQFVLE
160 170 180 190 200
LEPFSYNNQQ LRFSDIQVYT ENIDNEEIDE WWIRGKASTH ISDIRYDHLS
210 220 230 240 250
SVQPNQNEFS RITVRIDAVR NPSYYLWSFI LPLGLIIAAS WSVFWLESFS
260 270 280 290 300
ERLQTSFTLM LTVVAYAFYT SNILPRLPYT TVIDQMIIAG YGSIFAAILL
310 320 330 340
IIFAHHRQAN GVEDDLLIQR CRLAFPLGFL AIGCVLVIRG ITL
Length:343
Mass (Da):39,175
Last modified:November 2, 2010 - v1
Checksum:i90663D9956C5C82E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002038 Genomic DNA. Translation: ADN00343.1.
RefSeqiWP_013319743.1. NC_014500.1.

Genome annotation databases

EnsemblBacteriaiADN00343; ADN00343; Dda3937_00520.
GeneIDi9735629.
KEGGiddd:Dda3937_00520.
PATRICifig|198628.6.peg.4084.

Similar proteinsi

Entry informationi

Entry nameiE0SJQ4_DICD3
AccessioniPrimary (citable) accession number: E0SJQ4
Entry historyiIntegrated into UniProtKB/TrEMBL: November 2, 2010
Last sequence update: November 2, 2010
Last modified: October 25, 2017
This is version 45 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported