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Protein
Submitted name:

Gamma-aminobutyric-acid receptor subunit beta-1

Gene

Dda3937_00520

Organism
Dickeya dadantii (strain 3937) (Erwinia chrysanthemi (strain 3937))
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

ReceptorImported

Enzyme and pathway databases

BioCyciDDAD198628:GHFQ-4244-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Gamma-aminobutyric-acid receptor subunit beta-1Imported
Gene namesi
Ordered Locus Names:Dda3937_00520Imported
OrganismiDickeya dadantii (strain 3937) (Erwinia chrysanthemi (strain 3937))Imported
Taxonomic identifieri198628 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeDickeya
Proteomesi
  • UP000006859 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei224 – 24522HelicalSequence analysisAdd
BLAST
Transmembranei257 – 27418HelicalSequence analysisAdd
BLAST
Transmembranei286 – 30318HelicalSequence analysisAdd
BLAST
Transmembranei323 – 34220HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2121Sequence analysisAdd
BLAST
Chaini22 – 343322Sequence analysisPRO_5003140389Add
BLAST

Interactioni

Protein-protein interaction databases

DIPiDIP-60036N.
STRINGi198628.Dda3937_00520.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2YN6X-ray3.31A/B/C/D/E22-343[»]
3RQUX-ray3.09A/B/C/D/E/F/G/H/I/J22-343[»]
3RQWX-ray2.91A/B/C/D/E/F/G/H/I/J22-343[»]
3UQ4X-ray3.50A/B/C/D/E/F/G/H/I/J22-343[»]
3UQ5X-ray4.20A/B/C/D/E/F/G/H/I/J22-343[»]
3UQ7X-ray3.80A/B/C/D/E/F/G/H/I/J22-343[»]
4Z90X-ray3.00A/B/C/D/E/F/G/H/I/J22-343[»]
4Z91X-ray3.39A/B/C/D/E/F/G/H/I/J22-343[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini28 – 217190Neur_chan_LBDInterPro annotationAdd
BLAST

Keywords - Domaini

SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG4105TA1. Bacteria.
ENOG4111U8M. LUCA.
HOGENOMiHOG000157201.
OMAiHISDIRY.
OrthoDBiPOG091H13WE.

Family and domain databases

Gene3Di2.70.170.10. 1 hit.
InterProiIPR006202. Neur_chan_lig-bd.
IPR006201. Neur_channel.
IPR006029. Neurotrans-gated_channel_TM.
[Graphical view]
PANTHERiPTHR18945. PTHR18945. 1 hit.
PfamiPF02931. Neur_chan_LBD. 1 hit.
[Graphical view]
SUPFAMiSSF63712. SSF63712. 1 hit.
SSF90112. SSF90112. 1 hit.

Sequencei

Sequence statusi: Complete.

E0SJQ4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRILWSCCGL VLLLLGLPAW SAPADNAADA RPVDVSVSIF INKIYGVNTL
60 70 80 90 100
EQTYKVDGYI VAQWTGKPRK TPGDKPLIVE NTQIERWINN GLWVPALEFI
110 120 130 140 150
NVVGSPDTGN KRLMLFPDGR VIYNARFLGS FSNDMDFRLF PFDRQQFVLE
160 170 180 190 200
LEPFSYNNQQ LRFSDIQVYT ENIDNEEIDE WWIRGKASTH ISDIRYDHLS
210 220 230 240 250
SVQPNQNEFS RITVRIDAVR NPSYYLWSFI LPLGLIIAAS WSVFWLESFS
260 270 280 290 300
ERLQTSFTLM LTVVAYAFYT SNILPRLPYT TVIDQMIIAG YGSIFAAILL
310 320 330 340
IIFAHHRQAN GVEDDLLIQR CRLAFPLGFL AIGCVLVIRG ITL
Length:343
Mass (Da):39,175
Last modified:November 2, 2010 - v1
Checksum:i90663D9956C5C82E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002038 Genomic DNA. Translation: ADN00343.1.
RefSeqiWP_013319743.1. NC_014500.1.

Genome annotation databases

EnsemblBacteriaiADN00343; ADN00343; Dda3937_00520.
GeneIDi9735629.
KEGGiddd:Dda3937_00520.
PATRICi42320599. VBIDicDad25310_4084.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002038 Genomic DNA. Translation: ADN00343.1.
RefSeqiWP_013319743.1. NC_014500.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2YN6X-ray3.31A/B/C/D/E22-343[»]
3RQUX-ray3.09A/B/C/D/E/F/G/H/I/J22-343[»]
3RQWX-ray2.91A/B/C/D/E/F/G/H/I/J22-343[»]
3UQ4X-ray3.50A/B/C/D/E/F/G/H/I/J22-343[»]
3UQ5X-ray4.20A/B/C/D/E/F/G/H/I/J22-343[»]
3UQ7X-ray3.80A/B/C/D/E/F/G/H/I/J22-343[»]
4Z90X-ray3.00A/B/C/D/E/F/G/H/I/J22-343[»]
4Z91X-ray3.39A/B/C/D/E/F/G/H/I/J22-343[»]
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-60036N.
STRINGi198628.Dda3937_00520.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADN00343; ADN00343; Dda3937_00520.
GeneIDi9735629.
KEGGiddd:Dda3937_00520.
PATRICi42320599. VBIDicDad25310_4084.

Phylogenomic databases

eggNOGiENOG4105TA1. Bacteria.
ENOG4111U8M. LUCA.
HOGENOMiHOG000157201.
OMAiHISDIRY.
OrthoDBiPOG091H13WE.

Enzyme and pathway databases

BioCyciDDAD198628:GHFQ-4244-MONOMER.

Family and domain databases

Gene3Di2.70.170.10. 1 hit.
InterProiIPR006202. Neur_chan_lig-bd.
IPR006201. Neur_channel.
IPR006029. Neurotrans-gated_channel_TM.
[Graphical view]
PANTHERiPTHR18945. PTHR18945. 1 hit.
PfamiPF02931. Neur_chan_LBD. 1 hit.
[Graphical view]
SUPFAMiSSF63712. SSF63712. 1 hit.
SSF90112. SSF90112. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiE0SJQ4_DICD3
AccessioniPrimary (citable) accession number: E0SJQ4
Entry historyi
Integrated into UniProtKB/TrEMBL: November 2, 2010
Last sequence update: November 2, 2010
Last modified: September 7, 2016
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.