E0SCL0 (E0SCL0_DICD3) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
2-dehydro-3-deoxyphosphooctonate aldolase HAMAP-Rule MF_00056
EC=2.5.1.55 HAMAP-Rule MF_00056

Alternative name(s):
3-deoxy-D-manno-octulosonic acid 8-phosphate synthase HAMAP-Rule MF_00056
KDO-8-phosphate synthase HAMAP-Rule MF_00056
Phospho-2-dehydro-3-deoxyoctonate aldolase HAMAP-Rule MF_00056

Gene names

Name:	kdsA HAMAP-Rule MF_00056
Ordered Locus Names:	Dda3937_00038

Organism

Dickeya dadantii (strain 3937) (Erwinia chrysanthemi (strain 3937)) [Complete proteome] [HAMAP] EMBL ADM98534.1

Taxonomic identifier

198628 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Dickeya › Dickeya dadantii

Protein attributes

Sequence length	284 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	Phosphoenolpyruvate + D-arabinose 5-phosphate + H2O = 2-dehydro-3-deoxy-D-octonate 8-phosphate + phosphate. HAMAP-Rule MF_00056 SAAS SAAS006269
Pathway	Bacterial outer membrane biogenesis; lipopolysaccharide biosynthesis. HAMAP-Rule MF_00056 SAAS SAAS006269 Carbohydrate biosynthesis; 3-deoxy-D-manno-octulosonate biosynthesis; 3-deoxy-D-manno-octulosonate from D-ribulose 5-phosphate: step 2/3. HAMAP-Rule MF_00056 SAAS SAAS006269
Subcellular location	Cytoplasm By similarity HAMAP-Rule MF_00056 SAAS SAAS006269.
Sequence similarities	Belongs to the KdsA family. HAMAP-Rule MF_00056

Ontologies

Keywords
Biological process	Lipopolysaccharide biosynthesis HAMAP-Rule MF_00056 SAAS SAAS006269
Cellular component	Cytoplasm HAMAP-Rule MF_00056 SAAS SAAS006269
Molecular function	Transferase HAMAP-Rule MF_00056 SAAS SAAS006269 EMBL ADM98534.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	keto-3-deoxy-D-manno-octulosonic acid biosynthetic process Inferred from electronic annotation. Source: HAMAP
Cellular_component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	3-deoxy-8-phosphooctulonate synthase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	E0SCL0 [UniParc]. Last modified November 2, 2010. Version 1. Checksum: 44CCFEE22107CD1B	FASTA	284	30,898
	10 20 30 40 50 60 MNNKVVNIGD IPVANSLPFV LFGGMNVLES RDLAMRICEH YVTVTQKLGI PYVFKASFDK 70 80 90 100 110 120 ANRSSIHSYR GPGLEAGMKI FQELKQTFGV KIITDVHEPQ QAQPVSEVVD VIQLPAFLAR 130 140 150 160 170 180 QTDLVEAMAK TDAVINIKKP QFISPGQVGN IVDKFREGGN EQVILCDRGS NFGYDNLVVD 190 200 210 220 230 240 MLGFNVMKQV SHGAPVIFDV THALQCRDPF GAASGGRRAQ VAELARAGMA VGIAGLFIEA 250 260 270 280 HPEPNSAMCD GPSALPLTKL EPFLQQMKAI DELVKSFPEL DTSN

References

[1]

"Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937." Glasner J.D., Yang C.H., Reverchon S., Hugouvieux-Cotte-Pattat N., Condemine G., Bohin J.P., Van Gijsegem F., Yang S., Franza T., Expert D., Plunkett G. III, San Francisco M.J., Charkowski A.O., Py B., Bell K., Rauscher L., Rodriguez-Palenzuela P., Toussaint A. , Holeva M.C., He S.Y., Douet V., Boccara M., Blanco C., Toth I., Anderson B.D., Biehl B.S., Mau B., Flynn S.M., Barras F., Lindeberg M., Birch P.R., Tsuyumu S., Shi X., Hibbing M., Yap M.N., Carpentier M., Dassa E., Umehara M., Kim J.F., Rusch M., Soni P., Mayhew G.F., Fouts D.E., Gill S.R., Blattner F.R., Keen N.T., Perna N.T. J. Bacteriol. 193:2076-2077(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 3937.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002038 Genomic DNA. Translation: ADM98534.1.
RefSeq	YP_003883091.1. NC_014500.1.
3D structure databases
ProteinModelPortal	E0SCL0.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADM98534; ADM98534; Dda3937_00038.
GeneID	9733768.
KEGG	ddd:Dda3937_00038.
PATRIC	42316980. VBIDicDad25310_2312.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000023021.
KO	K01627.
OMA	LCDRGTC.
Enzyme and pathway databases
BioCyc	DDAD198628:GHFQ-2382-MONOMER.
UniPathway	UPA00030. UPA00357; UER00474.
Family and domain databases
Gene3D	3.20.20.70. 1 hit.
HAMAP	MF_00056. KDO8P_synth.
InterPro	IPR013785. Aldolase_TIM. IPR006218. DAHP1/KDSA. IPR006269. KDO8P_synthase. [Graphical view]
PANTHER	PTHR21057:SF2. PTHR21057:SF2. 1 hit.
Pfam	PF00793. DAHP_synth_1. 1 hit. [Graphical view]
TIGRFAMs	TIGR01362. KDO8P_synth. 1 hit.
ProtoNet	Search...

Entry information

Entry name

E0SCL0_DICD3

Accession

Primary (citable) accession number: E0SCL0

Entry history

Integrated into UniProtKB/TrEMBL:	November 2, 2010
Last sequence update:	November 2, 2010
Last modified:	May 1, 2013
This is version 19 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)