Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Predicted xylanase/chitin deacetylase

Gene

PPE_01041

Organism
Paenibacillus polymyxa (strain E681)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseImported, Hydrolase

Keywords - Biological processi

Carbohydrate metabolism, Polysaccharide degradation, Xylan degradationImported

Enzyme and pathway databases

BioCyciPPOL349520:GH6J-1036-MONOMER.

Protein family/group databases

CAZyiCBM36. Carbohydrate-Binding Module Family 36.

Names & Taxonomyi

Protein namesi
Submitted name:
Predicted xylanase/chitin deacetylaseImported
Gene namesi
Ordered Locus Names:PPE_01041Imported
OrganismiPaenibacillus polymyxa (strain E681)Imported
Taxonomic identifieri349520 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesPaenibacillaceaePaenibacillus
Proteomesi
  • UP000002227 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3333Sequence analysisAdd
BLAST
Chaini34 – 357324Sequence analysisPRO_5003139589Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi349520.PPE_01041.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini39 – 215177NodB homologyInterPro annotationAdd
BLAST
Domaini240 – 357118CBM6 (carbohydrate binding type-6)InterPro annotationAdd
BLAST

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4107YZG. Bacteria.
COG0726. LUCA.
HOGENOMiHOG000165282.
OMAiAAGMWIG.

Family and domain databases

Gene3Di2.60.120.260. 1 hit.
3.20.20.370. 1 hit.
InterProiIPR005084. CMB_fam6.
IPR008979. Galactose-bd-like.
IPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR002509. NODB_dom.
[Graphical view]
PfamiPF03422. CBM_6. 1 hit.
PF01522. Polysacc_deac_1. 1 hit.
[Graphical view]
SUPFAMiSSF49785. SSF49785. 1 hit.
SSF88713. SSF88713. 1 hit.
PROSITEiPS51175. CBM6. 1 hit.
PS51677. NODB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E0RKD4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIIAKAGKWT AIMSITLSLF TGSLVISSNQ ALAADCSSGY VALTFDDGPN
60 70 80 90 100
PSNTKALLSA LKQNGLRATL FNLGQNAQNN PSLVRDQQAA GMWIGNHSWS
110 120 130 140 150
HPHMTQLSTS QMSSEITRTQ QTIQSITGTA PKLFRPPYGE TNATLKSIET
160 170 180 190 200
QNGLTEVLWN VDSQDWNGAS TAQIVAAAGK LKNGDVILMH DQYQTTLQAI
210 220 230 240 250
PQIAQNLKNR NLCSGMISPS NGRAVAPDGG NGETPPNKGT KVEAENMTKG
260 270 280 290 300
GQYTSNISSP FNGVALYSNN DSVKFTQNFT SGTHSFSLCG ASNNSNMAKV
310 320 330 340 350
DLKIGGQTKG TFYFGGSSPA VYTLNNVSHG TGNQEIELVV TADDGTWDAY

IDYLEII
Length:357
Mass (Da):38,040
Last modified:November 2, 2010 - v1
Checksum:iAB97D78826A4E242
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000154 Genomic DNA. Translation: ADM68889.1.
RefSeqiWP_013309070.1. NC_014483.2.

Genome annotation databases

KEGGippy:PPE_01041.
PATRICi42407730. VBIPaePol94484_1014.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000154 Genomic DNA. Translation: ADM68889.1.
RefSeqiWP_013309070.1. NC_014483.2.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi349520.PPE_01041.

Protein family/group databases

CAZyiCBM36. Carbohydrate-Binding Module Family 36.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

KEGGippy:PPE_01041.
PATRICi42407730. VBIPaePol94484_1014.

Phylogenomic databases

eggNOGiENOG4107YZG. Bacteria.
COG0726. LUCA.
HOGENOMiHOG000165282.
OMAiAAGMWIG.

Enzyme and pathway databases

BioCyciPPOL349520:GH6J-1036-MONOMER.

Family and domain databases

Gene3Di2.60.120.260. 1 hit.
3.20.20.370. 1 hit.
InterProiIPR005084. CMB_fam6.
IPR008979. Galactose-bd-like.
IPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR002509. NODB_dom.
[Graphical view]
PfamiPF03422. CBM_6. 1 hit.
PF01522. Polysacc_deac_1. 1 hit.
[Graphical view]
SUPFAMiSSF49785. SSF49785. 1 hit.
SSF88713. SSF88713. 1 hit.
PROSITEiPS51175. CBM6. 1 hit.
PS51677. NODB. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiE0RKD4_PAEP6
AccessioniPrimary (citable) accession number: E0RKD4
Entry historyi
Integrated into UniProtKB/TrEMBL: November 2, 2010
Last sequence update: November 2, 2010
Last modified: July 6, 2016
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.