E0J164 (E0J164_ECOLW) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Exodeoxyribonuclease I EMBL EFN38097.1
EC=3.1.11.1 EMBL EFN38097.1

Submitted name:
Exonuclease I EMBL ADT75613.1
EC=3.1.11.1 EMBL AFH11784.1

Gene names

Name:	sbcB EMBL ADT75613.1
Ordered Locus Names:	ECW_m2170 EMBL ADT75613.1, WFL_10630 EMBL AFH11784.1
ORF Names:	EschWDRAFT_2323 EMBL EFN38097.1

Organism

Escherichia coli (strain ATCC 9637 / CCM 2024 / DSM 1116 / NCIMB 8666 / NRRL B-766 / W) [Complete proteome] [HAMAP] EMBL EFN38097.1

Taxonomic identifier

566546 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia › Escherichia coli

Protein attributes

Sequence length	475 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Exonuclease EMBL ADT75613.1 Hydrolase Nuclease
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	exodeoxyribonuclease I activity Inferred from electronic annotation. Source: EC nucleic acid binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	E0J164 [UniParc]. Last modified November 2, 2010. Version 1. Checksum: 549203054E8B3750	FASTA	475	54,475
	10 20 30 40 50 60 MMNDGKQQST FLFHDYETFG THPALDRPAQ FAAIRTDSEF NVIGEPEVFY CKPADDYLPQ 70 80 90 100 110 120 PGAVLITGIT PQEARAKGEN EAAFAARIHS LFTVPKTCIL GYNNVRFDDE VTRNVFYRNF 130 140 150 160 170 180 YDPYAWSWQH DNSRWDLLDV MRACYALRPE GINWPENDDG LPSFRLEHLT KANGIEHSNA 190 200 210 220 230 240 HDAMADVYAT IAMAKLVKTR QPRLFDYLFT HRNKHKLMAL IDVPQMKPLV HVSGMFGAWR 250 260 270 280 290 300 GNTSWVAPLA WHPENRNAVI MVDLAGDISL LLELDSDTLR ERLYTAKTDL GDNAAVPVKL 310 320 330 340 350 360 VHINKCPVLA QANTLRPEDA DRLGINRQHC LDNLKILREN PQVREKVVAI FAEAEPFTPS 370 380 390 400 410 420 DNVDAQLYNG FFSDADRAAM KIVLETEPRN LPALDITFVD KRIEKLLFNY RARNFPGTLD 430 440 450 460 470 YAEQQRWLEH RRQVFTPEFL QGYADELQML AQQYADDKEK VALLKALWQY AEEIV

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The draft genome of Escherichia coli W." US DOE Joint Genome Institute (JGI-PGF) Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Land M.L., Hauser L., Chang Y.-J., Jeffries C., Tremaine M., Landick R., Keating D., Woyke T.J. Submitted (JUL-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: W EMBL EFN38097.1.
[2]	"The genome sequence of E. coli W (ATCC 9637): comparative genome analysis and an improved genome-scale reconstruction of E. coli." Archer C.T., Kim J.F., Jeong H., Park J.H., Vickers C.E., Lee S.Y., Nielsen L.K. BMC Genomics 12:9-9(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 9637 / CCM 2024 / DSM 1116 / NCIMB 8666 / NRRL B-766 / W and W EMBL ADT75613.1.
[3]	"Optical mapping and sequencing of the Escherichia coli KO11 genome reveal extensive chromosomal rearrangements, and multiple tandem copies of the Zymomonas mobilis pdc and adhB genes." Turner P.C., Yomano L.P., Jarboe L.R., York S.W., Baggett C.L., Moritz B.E., Zentz E.B., Shanmugam K.T., Ingram L.O. J. Ind. Microbiol. Biotechnol. 39:629-639(2012) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 9637 / CCM 2024 / DSM 1116 / NCIMB 8666 / NRRL B-766 / W and W EMBL AFH11784.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002185 Genomic DNA. Translation: ADT75613.1. CP002967 Genomic DNA. Translation: AFH11784.1. AEDF01000010 Genomic DNA. Translation: EFN38097.1.
RefSeq	YP_006124855.1. NC_017635.1. YP_006173570.1. NC_017664.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADT75613; ADT75613; ECW_m2170. AFH11784; AFH11784; WFL_10630. EFN38097; EFN38097; EschWDRAFT_2323.
GeneID	12695929. 12754199.
KEGG	ell:WFL_10630. elw:ECW_m2170.
PATRIC	41593685. VBIEscCol201000_2566.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01141.
Family and domain databases
InterPro	IPR023607. Exodeoxyribonuclease_I. IPR013620. Exonuc_X-T_C. IPR013520. Exonuclease_RNaseT/DNA_pol3. IPR012337. RNaseH-like_dom. [Graphical view]
Pfam	PF08411. Exonuc_X-T_C. 1 hit. PF00929. RNase_T. 1 hit. [Graphical view]
PIRSF	PIRSF000977. Exodeoxyribonuclease_I. 1 hit.
SUPFAM	SSF53098. RNaseH_fold. 1 hit.
ProtoNet	Search...

Entry information

Entry name

E0J164_ECOLW

Accession

Primary (citable) accession number: E0J164

Entry history

Integrated into UniProtKB/TrEMBL:	November 2, 2010
Last sequence update:	November 2, 2010
Last modified:	May 29, 2013
This is version 16 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)