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Protein
Submitted name:

Predicted DNA-binding transcriptional regulator

Gene

ydjF

Organism
Escherichia coli (strain ATCC 9637 / CCM 2024 / DSM 1116 / NCIMB 8666 / NRRL B-766 / W)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi20 – 39H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotationImported
Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Predicted DNA-binding transcriptional regulatorImported
Gene namesi
Name:ydjFImported
Ordered Locus Names:ECW_m1939Imported
OrganismiEscherichia coli (strain ATCC 9637 / CCM 2024 / DSM 1116 / NCIMB 8666 / NRRL B-766 / W)Imported
Taxonomic identifieri566546 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000008525 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Structurei

3D structure databases

ProteinModelPortaliE0IXC5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini3 – 58HTH deoR-typeInterPro annotationAdd BLAST56

Phylogenomic databases

OMAiMWQEDRH.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR014036. DeoR_C.
IPR001034. DeoR_HTH.
IPR037171. NagB/RpiA_transferase-like.
IPR018356. Tscrpt_reg_HTH_DeoR_CS.
IPR036388. WH-like_DNA-bd_sf.
IPR036390. WH_DNA-bd_sf.
PfamiView protein in Pfam
PF00455. DeoRC. 1 hit.
PF08220. HTH_DeoR. 1 hit.
PRINTSiPR00037. HTHLACR.
SMARTiView protein in SMART
SM00420. HTH_DEOR. 1 hit.
SUPFAMiSSF100950. SSF100950. 1 hit.
SSF46785. SSF46785. 1 hit.
PROSITEiView protein in PROSITE
PS00894. HTH_DEOR_1. 1 hit.
PS51000. HTH_DEOR_2. 1 hit.

Sequencei

Sequence statusi: Complete.

E0IXC5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAKDRIQAI KQMVANDKKV TVSNLSGIFQ VTEETIRRDL EKLEDEGFLT
60 70 80 90 100
RTYGGAVLNT AMLTENIHFY KRASSFYEEK QLIARKALPF IDNKTTMAAD
110 120 130 140 150
SSSTVMELLK LLQDRSGLTL LTNSAEAIHV LAQSEIKVVS TGGELNKNTL
160 170 180 190 200
SLQGRITKEI IRRYHVDIMV MSCKGLDINS GALDSNEAEA EIKKTMIRQA
210 220 230 240 250
TEVALLVDHS KFDRKAFVQL ADFSHINYII TDKSPGAEWI AFCKDNNIQL

VW
Length:252
Mass (Da):28,261
Last modified:November 2, 2010 - v1
Checksum:i7D76EBB55B1B270C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002185 Genomic DNA. Translation: ADT75400.1.
RefSeqiWP_000719096.1. NZ_AEDF01000003.1.

Genome annotation databases

EnsemblBacteriaiADT75400; ADT75400; ECW_m1939.
KEGGiell:WFL_09515.
elw:ECW_m1939.
PATRICifig|566546.30.peg.1977.

Similar proteinsi

Entry informationi

Entry nameiE0IXC5_ECOLW
AccessioniPrimary (citable) accession number: E0IXC5
Entry historyiIntegrated into UniProtKB/TrEMBL: November 2, 2010
Last sequence update: November 2, 2010
Last modified: March 28, 2018
This is version 65 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported