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D9TIN1 (D9TIN1_CALOO) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 23. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Aspartate--tRNA ligase HAMAP-Rule MF_00044
EC=6.1.1.12 HAMAP-Rule MF_00044
Alternative name(s):
Aspartyl-tRNA synthetase HAMAP-Rule MF_00044
Gene names
Name:aspS HAMAP-Rule MF_00044
Ordered Locus Names:COB47_0545 EMBL ADL41863.1
OrganismCaldicellulosiruptor obsidiansis (strain ATCC BAA-2073 / strain OB47) [Complete proteome] [HAMAP] EMBL ADL41863.1
Taxonomic identifier608506 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Clostridia › Thermoanaerobacterales › Thermoanaerobacterales Family III. Incertae Sedis › Caldicellulosiruptor ›

Protein attributes

Sequence length594 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + L-aspartate + tRNA(Asp) = AMP + diphosphate + L-aspartyl-tRNA(Asp). HAMAP-Rule MF_00044

Subunit structure

Homodimer By similarity. HAMAP-Rule MF_00044 SAAS SAAS004524

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00044 SAAS SAAS004524.

Sequence similarities

Belongs to the class-II aminoacyl-tRNA synthetase family. RuleBase RU003746 HAMAP-Rule MF_00044

Sequences

Sequence LengthMass (Da)Tools
D9TIN1 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: F663761FDE4BA84F

FASTA59467,839
        10         20         30         40         50         60 
MESIKDFKRT KYCGEVSLED VGKEVVLTGW VDTRRDLGGI IFVDLRDRTG IVQVVFDEKM 

        70         80         90        100        110        120 
GEELLDKADS LRSEYCIGIR GIVEKRPPET INPKIKTGEV EVRAQELRIF SKSETPPFPI 

       130        140        150        160        170        180 
EEGINVNEAV RLKYRYLDLR RPDMQKNLMF RHKLYQVVRN FLSQNGFIEI ETPMLTKSTP 

       190        200        210        220        230        240 
EGARDYLVPS RIFPGKFFAL PQSPQLFKQL LMVAGFDRYF QIVKCFRDED LRADRQPEFT 

       250        260        270        280        290        300 
QIDIEMSFVD VDDVIEINER LLQTIFGEML GIDLKLPLPR LTYKEAMERF GSDKPDTRFG 

       310        320        330        340        350        360 
MELVNLTDIA KNCEFKVFAD AANKGGSVRA INAKGCAITF SRREIDALVE YAKNFGAKGL 

       370        380        390        400        410        420 
AWIAVESDGL KSPIVKFLKE EEINEILKRL GAEVGDLLLF SADKDEIVFD VLGNIRLEIA 

       430        440        450        460        470        480 
RKLNLLDKSK FNLLWVTEFP LFEYSEEEGR YVAKHHPFTS PMDEDIEFLE TDPAKVRSKA 

       490        500        510        520        530        540 
YDIVLNGTEI GGGSIRIHST ELQKRMFKAL GFTEERAQDR FGFLLEAFKY GTPPHGGIAY 

       550        560        570        580        590 
GFDRLCMLLL GLDSIRDTIA FPKVKDSSCP LTDAPSEVEP KQLRELHIKV DVVK

« Hide

References

[1]"Complete genome sequence of the cellulolytic thermophile Caldicellulosiruptor obsidiansis OB47T."
Elkins J.G., Lochner A., Hamilton-Brehm S.D., Davenport K.W., Podar M., Brown S.D., Land M.L., Hauser L.J., Klingeman D.M., Raman B., Goodwin L.A., Tapia R., Meincke L.J., Detter J.C., Bruce D.C., Han C.S., Palumbo A.V., Cottingham R.W., Keller M., Graham D.E.
J. Bacteriol. 192:6099-6100(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-2073 / strain OB47.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002164 Genomic DNA. Translation: ADL41863.1.
RefSeqYP_003839849.1. NC_014392.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADL41863; ADL41863; COB47_0545.
GeneID9604972.
KEGGcob:COB47_0545.
PATRIC42228265. VBICalObs143161_0605.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000275159.
KOK01876.

Enzyme and pathway databases

BioCycCOBS608506:GH1S-555-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
3.30.1360.30. 1 hit.
HAMAPMF_00044_B. Asp_tRNA_synth_B.
InterProIPR004364. aa-tRNA-synt_II.
IPR018150. aa-tRNA-synt_II-like.
IPR006195. aa-tRNA-synth_II.
IPR004524. Asp-tRNA-ligase_IIb_bac/mt.
IPR002312. Asp/Asn-tRNA-synth_IIb.
IPR004115. GAD_dom.
IPR012340. NA-bd_OB-fold.
IPR004365. NA-bd_OB_tRNA-helicase.
[Graphical view]
PANTHERPTHR22594. PTHR22594. 1 hit.
PTHR22594:SF5. PTHR22594:SF5. 1 hit.
PfamPF02938. GAD. 1 hit.
PF00152. tRNA-synt_2. 1 hit.
PF01336. tRNA_anti. 1 hit.
[Graphical view]
PRINTSPR01042. TRNASYNTHASP.
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
SSF55261. SSF55261. 1 hit.
TIGRFAMsTIGR00459. aspS_bact. 1 hit.
PROSITEPS50862. AA_TRNA_LIGASE_II. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD9TIN1_CALOO
AccessionPrimary (citable) accession number: D9TIN1
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: May 1, 2013
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info