D9THF5 (D9THF5_CALOO) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Alpha amylase catalytic region EMBL ADL41520.1

Gene names

Ordered Locus Names:

COB47_0156

Organism

Caldicellulosiruptor obsidiansis (strain ATCC BAA-2073 / strain OB47) [Complete proteome] [HAMAP] EMBL ADL41520.1

Taxonomic identifier

608506 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Clostridia › Thermoanaerobacterales › Thermoanaerobacterales Family III. Incertae Sedis › Caldicellulosiruptor › Caldicellulosiruptor obsidiansis

Protein attributes

Sequence length	558 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	catalytic activity Inferred from electronic annotation. Source: InterPro cation binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D9THF5 [UniParc]. Last modified October 5, 2010. Version 1. Checksum: ED11E5250D44D086	FASTA	558	66,267
	10 20 30 40 50 60 MDLHKKWWKE AVVYQIYPRS FYDSNGDGIG DLPGIIEKLD YLQELGVDVI WLNPIYKSPN 70 80 90 100 110 120 ADNGYDISDY YDIMDEFGTM EDFDRLLNEA HKRGIKIVMD LVVNHTSDEH KWFLESRKSK 130 140 150 160 170 180 DSPYRNFYFW RPGKNGKPPN NWTSFFGGPA WEYDSQTGEY YLHLFATKQP DLNWDNPQVR 190 200 210 220 230 240 QEVYKMMKWW LDKGIDGFRM DVINLISKVE GLPDDREGEK KGGLVGFKYY ANGPRVHEYL 250 260 270 280 290 300 QEMNREVLSK YDIMTVGETP FVTPEIAKLY VEYDRNELNM LFHFEHMDMD CEGSKWNVKC 310 320 330 340 350 360 WKLTDLKKIM YKWYLALKDK GWNSLYLNNH DQPRMVSRFG NDKEYRVESA KLLATLLHTW 370 380 390 400 410 420 QGTPYIYQGE EIGMTNCKFK SIDEFRDIET LNFYREMKEK GISDDSILEI LNKRSRDHAR 430 440 450 460 470 480 TPMQWDDSEN AGFTTGKPWI KVNPNYKEIN VKKALADKDS IFYYYKKLIQ LRKTHPAVVY 490 500 510 520 530 540 GDIQMLYEND EKIFAYTRSY GNEKLLVVMN FSEEEVEFCA PKEIFFNKPE LLISNYEVED 550 DIQQKIVLKP CESRVYKI

References

[1]

"Complete genome sequence of the cellulolytic thermophile Caldicellulosiruptor obsidiansis OB47T." Elkins J.G., Lochner A., Hamilton-Brehm S.D., Davenport K.W., Podar M., Brown S.D., Land M.L., Hauser L.J., Klingeman D.M., Raman B., Goodwin L.A., Tapia R., Meincke L.J., Detter J.C., Bruce D.C., Han C.S., Palumbo A.V., Cottingham R.W., Keller M., Graham D.E. J. Bacteriol. 192:6099-6100(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-2073 / strain OB47.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002164 Genomic DNA. Translation: ADL41520.1.
RefSeq	YP_003839506.1. NC_014392.1.
3D structure databases
ProteinModelPortal	D9THF5.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADL41520; ADL41520; COB47_0156.
GeneID	9604574.
KEGG	cob:COB47_0156.
PATRIC	42227392. VBICalObs143161_0176.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000220641.
KO	K01182.
Enzyme and pathway databases
BioCyc	COBS608506:GH1S-157-MONOMER.
Family and domain databases
Gene3D	2.60.40.1180. 1 hit. 3.20.20.80. 2 hits.
InterPro	IPR015902. Glyco_hydro_13. IPR013780. Glyco_hydro_13_b. IPR006047. Glyco_hydro_13_cat_dom. IPR006589. Glyco_hydro_13_sub_cat_dom. IPR013781. Glyco_hydro_catalytic_dom. IPR017853. Glycoside_hydrolase_SF. [Graphical view]
PANTHER	PTHR10357. PTHR10357. 1 hit.
Pfam	PF00128. Alpha-amylase. 1 hit. [Graphical view]
SMART	SM00642. Aamy. 1 hit. [Graphical view]
SUPFAM	SSF51445. Glyco_hydro_cat. 1 hit.
ProtoNet	Search...

Entry information

Entry name

D9THF5_CALOO

Accession

Primary (citable) accession number: D9THF5

Entry history

Integrated into UniProtKB/TrEMBL:	October 5, 2010
Last sequence update:	October 5, 2010
Last modified:	May 1, 2013
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)