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Protein
Submitted name:

DNA ligase D, 3'-phosphoesterase domain protein

Gene

Micau_1144

Organism
Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / BCRC 12538 / CBS 129.76 / JCM 10878 / NBRC 16125 / NRRL B-16091 / INA 9442)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMAUR644283:GHOD-1159-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase D, 3'-phosphoesterase domain proteinImported
Gene namesi
Ordered Locus Names:Micau_1144Imported
OrganismiMicromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / BCRC 12538 / CBS 129.76 / JCM 10878 / NBRC 16125 / NRRL B-16091 / INA 9442)Imported
Taxonomic identifieri644283 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaMicromonosporalesMicromonosporaceaeMicromonospora
Proteomesi
  • UP000001908 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi644283.Micau_1144.

Structurei

3D structure databases

ProteinModelPortaliD9TD68.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini260 – 34485DNA_LIGASE_A3InterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiENOG4108DYI. Bacteria.
COG1793. LUCA.
HOGENOMiHOG000222509.
KOiK01971.
OMAiLAKHTED.
OrthoDBiPOG091H0AZ9.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR014144. LigD_PE_domain.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D9TD68-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADRLEEYRR KRDAARTPEP VPERAPGRKR SARRAPRFVI QQHHARSLHW
60 70 80 90 100
DLRLEHDGVL ASWAVPRGLP RDPGRNHLAV HTEDHPMEYL TFHGEIPAGE
110 120 130 140 150
YGGGRMIVHD TGTYRAEKWR DDEVIVVLDG ERTKGRYVLF ATGGRGRDWM
160 170 180 190 200
IRRTDPAPEG WTPMPELVRP MLPAEGGRLP RDAAAWGYEL RWAGVRAMAY
210 220 230 240 250
VSGGRLRLLD GDDTEVTGDY PWTRAMAEAL APAEAVIDGV LVRIDPAGRV
260 270 280 290 300
RPPTRRDGQF LAVDLLWLEG VSSLDVPYAQ RRDLLDGLAL TGPHWQTPPW
310 320 330 340
FPGVGADALR AAREQGLPGV VAKRLDSPYE PGRRSRHWLS IDAS
Length:344
Mass (Da):38,668
Last modified:October 5, 2010 - v1
Checksum:i15D4B01907AF8AD9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002162 Genomic DNA. Translation: ADL44706.1.
RefSeqiWP_013284345.1. NC_014391.1.

Genome annotation databases

EnsemblBacteriaiADL44706; ADL44706; Micau_1144.
KEGGimau:Micau_1144.
PATRICi42387989. VBIMicAur74833_1163.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002162 Genomic DNA. Translation: ADL44706.1.
RefSeqiWP_013284345.1. NC_014391.1.

3D structure databases

ProteinModelPortaliD9TD68.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi644283.Micau_1144.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADL44706; ADL44706; Micau_1144.
KEGGimau:Micau_1144.
PATRICi42387989. VBIMicAur74833_1163.

Phylogenomic databases

eggNOGiENOG4108DYI. Bacteria.
COG1793. LUCA.
HOGENOMiHOG000222509.
KOiK01971.
OMAiLAKHTED.
OrthoDBiPOG091H0AZ9.

Enzyme and pathway databases

BioCyciMAUR644283:GHOD-1159-MONOMER.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR014144. LigD_PE_domain.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiD9TD68_MICAI
AccessioniPrimary (citable) accession number: D9TD68
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: September 7, 2016
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.