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D9SN23 (D9SN23_CLOC7) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 21. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ornithine carbamoyltransferase, catabolic HAMAP-Rule MF_01109
Short name=OTCase HAMAP-Rule MF_01109
EC=2.1.3.3 HAMAP-Rule MF_01109
Alternative name(s):
Ornithine carbamoyltransferase HAMAP-Rule MF_01109
Gene names
Name:arcB HAMAP-Rule MF_01109
Ordered Locus Names:Clocel_2146
OrganismClostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B) [Complete proteome] [HAMAP] EMBL ADL51889.1
Taxonomic identifier573061 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Clostridia › Clostridiales › Clostridiaceae › Clostridium ›

Protein attributes

Sequence length310 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Carbamoyl phosphate + L-ornithine = phosphate + L-citrulline. HAMAP-Rule MF_01109 SAAS SAAS002292

Pathway

Amino-acid degradation; L-arginine degradation via ADI pathway; carbamoyl phosphate from L-arginine: step 2/2. HAMAP-Rule MF_01109

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_01109 SAAS SAAS002292.

Sequence similarities

Belongs to the ATCase/OTCase family. HAMAP-Rule MF_01109 RuleBase RU003634

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region53 – 575Carbamoyl phosphate binding By similarity HAMAP-Rule MF_01109
Region265 – 2684Ornithine binding By similarity HAMAP-Rule MF_01109

Sites

Binding site1041Carbamoyl phosphate By similarity HAMAP-Rule MF_01109
Binding site1311Carbamoyl phosphate By similarity HAMAP-Rule MF_01109
Site281Important for structural integrity By similarity HAMAP-Rule MF_01109
Site1441Important for structural integrity By similarity HAMAP-Rule MF_01109

Sequences

Sequence LengthMass (Da)Tools
D9SN23 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: 6ABA3A4D0129860C

FASTA31035,263
        10         20         30         40         50         60 
MKAKDLLTLK DLSKEEILEI IDLSEQLKYE TKHGIEHHYL KGKTLGMIFR KHSTRTRVSF 

        70         80         90        100        110        120 
EVGMYQLGGF ALFLNSSDIQ MSRGEAIEDT GRVLARYLDG IMIRTFDQRE VEELAAASRI 

       130        140        150        160        170        180 
PIINGLTDEE HPCQVLADLL TIKENKRKFK GLKVAFVGDG HNMANTLMIG CLKVDMDFSI 

       190        200        210        220        230        240 
ATPKGYETKE KIIEAARLVE KDSLGTLTIT NSPEEAVKDA DVVITDVWTS MGQETEKNLR 

       250        260        270        280        290        300 
KEIFKSYQVN KQLMSFAKID AMVLHCLPAH KDEEITTEIF EEHQEEIFEE SENRLHVQKA 

       310 
VLVKLMGKNN

« Hide

References

[1]"Complete sequence of Clostridium cellulovorans 743B."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Chertkov O., Detter J.C., Han C., Tapia R., Land M., Hauser L., Chang Y.-J., Jeffries C., Kyrpides N., Ivanova N., Mikhailova N., Hemme C.L., Woyke T.
Submitted (AUG-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 35296 / DSM 3052 / OCM 3 / 743B.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002160 Genomic DNA. Translation: ADL51889.1.
RefSeqYP_003843653.1. NC_014393.1.

3D structure databases

ProteinModelPortalD9SN23.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADL51889; ADL51889; Clocel_2146.
GeneID9609019.
KEGGccb:Clocel_2146.
PATRIC41739986. VBICloCel81632203721_3698.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000022686.
KOK00611.

Enzyme and pathway databases

BioCycCCEL573061:GIXD-2211-MONOMER.
UniPathwayUPA00254; UER00365.

Family and domain databases

HAMAPMF_01109. OTCase.
InterProIPR006132. Asp/Orn_carbamoyltranf_P-bd.
IPR006130. Asp/Orn_carbamoylTrfase.
IPR006131. Asp_carbamoyltransf_Asp/Orn-bd.
IPR002292. Orn/put_carbamltrans.
IPR024904. Orn_carbamltrans.
[Graphical view]
PfamPF00185. OTCace. 1 hit.
PF02729. OTCace_N. 1 hit.
[Graphical view]
PRINTSPR00100. AOTCASE.
PR00102. OTCASE.
SUPFAMSSF53671. Asp/Orn_carbamoyltranf. 1 hit.
TIGRFAMsTIGR00658. orni_carb_tr. 1 hit.
PROSITEPS00097. CARBAMOYLTRANSFERASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD9SN23_CLOC7
AccessionPrimary (citable) accession number: D9SN23
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: May 1, 2013
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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