Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

D9SCC2 (D9SCC2_GALCS) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Protein attributes

Sequence length396 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. RuleBase RU000325 HAMAP-Rule MF_00118

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00118

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00118.

Sequence similarities

Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. RuleBase RU000325 HAMAP-Rule MF_00118

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding19 – 268GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding81 – 855GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding136 – 1394GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence LengthMass (Da)Tools
D9SCC2 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: 07ABC5BCE0DC1B7E

FASTA39643,014
        10         20         30         40         50         60 
MAKSKFERTK PHVNVGTIGH VDHGKTTLTA AITMVLCKKF GGEAKAYDQI DAAPEEKARG 

        70         80         90        100        110        120 
ITINTAHVEY ETATRHYAHV DCPGHADYVK NMITGAAQMD GAILVCSAAD GPMPQTREHI 

       130        140        150        160        170        180 
LLARQVGVPY IVVFLNKCDM VDDEELLELV EMEVRELLSK YDFPGDDIPV IKGSAMLAIK 

       190        200        210        220        230        240 
GDQSDIGEPA IFRLAEALDT YIPTPERAVD GAFLMPVEDV FSISGRGTVV TGRIERGIVK 

       250        260        270        280        290        300 
VGEEIEIVGI KPTLKTTCTG VEMFRKLLDQ GQAGDNVGVL LRGTKREEVE RGQVLCKPGS 

       310        320        330        340        350        360 
IKPHTKFTAE IYVLGKEEGG RHTPFFQGYR PQFYFRTTDV TGAVELPAGT EMVMPGDNVS 

       370        380        390 
ITVALINPIA MEEGLRFAIR EGGRTVGAGV VAKVIE 

« Hide

References

[1]"Complete sequence of Gallionella capsiferriformans ES-2."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Chertkov O., Davenport K.W., Detter J.C., Han C., Tapia R., Land M., Hauser L., Chang Y.-J., Jeffries C., Kyrpides N., Ivanova N. expand/collapse author list , Mikhailova N., Shelobolina E.S., Picardal F., Roden E., Emerson D., Woyke T.
Submitted (AUG-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ES-2 EMBL ADL54587.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002159 Genomic DNA. Translation: ADL54587.1.
CP002159 Genomic DNA. Translation: ADL54599.1.
RefSeqYP_003846351.1. NC_014394.1.
YP_003846363.1. NC_014394.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADL54587; ADL54587; Galf_0544.
ADL54599; ADL54599; Galf_0556.
GeneID9611872.
9611885.
KEGGgca:Galf_0544.
gca:Galf_0556.
PATRIC42337681. VBIGalCap53152_0555.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000229290.
KOK02358.

Enzyme and pathway databases

BioCycGCAP395494:GHXI-562-MONOMER.
GCAP395494:GHXI-575-MONOMER.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
HAMAPMF_00118_B. EF_Tu_B.
InterProIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSPR00315. ELONGATNFCT.
SUPFAMSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD9SCC2_GALCS
AccessionPrimary (citable) accession number: D9SCC2
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: April 16, 2014
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)