D9RAA6 (D9RAA6_CLOSW) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Alanine racemase RuleBase RU000608
EC=5.1.1.1 RuleBase RU000608

Gene names

Name:	alr
Ordered Locus Names:	Closa_1587

Organism

Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) [Complete proteome] [HAMAP] EMBL ADL04184.1

Taxonomic identifier

610130 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Clostridia › Clostridiales › Clostridiaceae › Clostridium › Clostridium saccharolyticum

Protein attributes

Sequence length	395 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-alanine = D-alanine. RuleBase RU000608 SAAS SAAS020622
Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000608 SAAS SAAS020622
Pathway	Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. RuleBase RU004247 SAAS SAAS020622
Sequence similarities	Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000608 SAAS SAAS020622
Molecular function	Isomerase RuleBase RU000608 SAAS SAAS020622 EMBL ADL04184.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	D-alanine biosynthetic process Inferred from electronic annotation. Source: UniProtKB-UniPathway
Molecular_function	alanine racemase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D9RAA6 [UniParc]. Last modified October 5, 2010. Version 1. Checksum: 862F1266793611E6	FASTA	395	43,450
	10 20 30 40 50 60 MKLYSRVYET VDLDAIRHNM EAMKANLKDG TRMIGVVKSD GYGHGAVPVA WAIDPYVWGY 70 80 90 100 110 120 AVATVEEGVI LRKHGIRKPI LVLGVVPYEG YGLLVEHGIS SAVFQLKRAE RLSSLAVREG 130 140 150 160 170 180 KKAVIHLVLD TGMSRIGYPV TEEAAKEAAT ICGLPGIEVE GLFTHFAKAD ERDKKATDHQ 190 200 210 220 230 240 LEQYQKFVAM LADRGITIPM LHCSNSAGIL DLQRANLHAV RAGISIYGIY PSGEVDRDTV 250 260 270 280 290 300 KLRPAMELKS FISYVKKIGP GTSVSYGGTF TADREMTVAT VPVGYGDGYP RNLSGKGEVL 310 320 330 340 350 360 IRGQRARILG RVCMDQFMVD VTGIHEAEEE DEVVLIGRQG KEEITVEDLA MAGGGFHYEI 370 380 390 VCDIGKRVPR IYLEDGRVIG TKDYFNDCYK GFCRV

References

[1]

"Complete sequence of Clostridium saccharolyticum WM1." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Chertkov O., Detter J.C., Han C., Tapia R., Land M., Hauser L., Chang Y.-J., Jeffries C., Kyrpides N., Ivanova N., Mikhailova N. , Mouttaki H., Lin L., Zhou J., Hemme C.L., Woyke T. Submitted (JUL-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 35040 / DSM 2544 / NRCC 2533 / WM1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002109 Genomic DNA. Translation: ADL04184.1.
RefSeq	YP_003821807.1. NC_014376.1.
3D structure databases
ProteinModelPortal	D9RAA6.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADL04184; ADL04184; Closa_1587.
GeneID	9506877.
KEGG	csh:Closa_1587.
PATRIC	42264680. VBICloSac91065_1719.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000031444.
KO	K01775.
Enzyme and pathway databases
BioCyc	CSAC610130:GHTP-1640-MONOMER.
UniPathway	UPA00042; UER00497.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. IPR020622. Ala_racemase_pyridoxalP-BS. [Graphical view]
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
PROSITE	PS00395. ALANINE_RACEMASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D9RAA6_CLOSW

Accession

Primary (citable) accession number: D9RAA6

Entry history

Integrated into UniProtKB/TrEMBL:	October 5, 2010
Last sequence update:	October 5, 2010
Last modified:	May 1, 2013
This is version 23 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)