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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Closa_1417

Organism
Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciCSAC610130:GHTP-1468-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Closa_1417Imported
OrganismiClostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1)Imported
Taxonomic identifieri610130 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesLachnospiraceae
ProteomesiUP000001662 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi610130.Closa_1417.

Structurei

3D structure databases

ProteinModelPortaliD9R943.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiATYNIFD.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D9R943-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDIFDIKKIS PMLISEMMDP FDSPDYIYEI KWDGIRCVSY LGTDTDIRNK
60 70 80 90 100
RNKLMAPLFP ELKNLHAQVK TKCILDHELL VLKNGVPDFY EVQKRALMAN
110 120 130 140 150
SFKIKLAADR YPASIIAYDI LYYKDKDITM LPLMERKKYL QDVVIENNMI
160 170 180 190 200
SVSRYVENEG IMLFDLVKEK GLEGVVAKRK NSLYWQGKRS KDWIKFKVMA
210 220 230 240 250
TDDCIICGYI VKEKSMPSLI LGQYDDDVLV YKGHVSLGVS LRILNQYKYQ
260 270 280 290 300
IIDYSPFGYV PAGNENAVWL APDLVCIVES MPTDKDSFRQ PVFKGIRNDK

SAIECKV
Length:307
Mass (Da):35,480
Last modified:October 5, 2010 - v1
Checksum:iB12DB34AF16E8D8E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002109 Genomic DNA. Translation: ADL04018.1.
RefSeqiWP_013272109.1. NC_014376.1.
YP_003821641.1. NC_014376.1.

Genome annotation databases

EnsemblBacteriaiADL04018; ADL04018; Closa_1417.
KEGGicsh:Closa_1417.
PATRICi42264308. VBICloSac91065_1533.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002109 Genomic DNA. Translation: ADL04018.1.
RefSeqiWP_013272109.1. NC_014376.1.
YP_003821641.1. NC_014376.1.

3D structure databases

ProteinModelPortaliD9R943.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi610130.Closa_1417.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADL04018; ADL04018; Closa_1417.
KEGGicsh:Closa_1417.
PATRICi42264308. VBICloSac91065_1533.

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiATYNIFD.

Enzyme and pathway databases

BioCyciCSAC610130:GHTP-1468-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 35040 / DSM 2544 / NRCC 2533 / WM1Imported.

Entry informationi

Entry nameiD9R943_CLOSW
AccessioniPrimary (citable) accession number: D9R943
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: June 24, 2015
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.