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Protein
Submitted name:

DNA ligase D

Gene

Bresu_0521

Organism
Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) (Caulobacter subvibrioides)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBSUB633149:GHJJ-524-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Bresu_0521Imported
OrganismiBrevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) (Caulobacter subvibrioides)Imported
Taxonomic identifieri633149 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaCaulobacteralesCaulobacteraceaeBrevundimonas
ProteomesiUP000002696 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi633149.Bresu_0521.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiLELHPWN.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D9QKL0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKGELKTYQA KRRFAETPEP KGTKATRKGA APLRYLIQRH AATRLHYDFR
60 70 80 90 100
IEFDGVLKSW AVTKAPSRDT TVKRLAVEVE DHPLDYGSFE GTIPDGNYGA
110 120 130 140 150
GTVQLWDTGT WSPRHPETLE ADWAKGSIKM DLDGERLKGG WALVRLKSDR
160 170 180 190 200
GKPSKWANWL LLKEKDAHAV PGEGDALAEI DASITTGRSL AEIAAGKTPG
210 220 230 240 250
TPTRPTGRKA AARPKAAPSG ATLSKPPAFT PIQLCKVADH PPSGAGWAHE
260 270 280 290 300
IKFDGYRVQI ATGGGKARLY TRSGLDWSQK FPEVVADAAR WPDGVIDGEL
310 320 330 340 350
CALDPDHMPD FPALQAAISA GRTADLVFFA FDLLSEGTED LREKPLSHRK
360 370 380 390 400
ARLSGHIDRM SRAARDRIRY VDHFASTGQA VLESACRMDL EGVISKKLDA
410 420 430 440 450
PYTAGRSSTW LKSKCRGGDE VVIGGWSSEN GTRFRSLLVG VREGEGLRYL
460 470 480 490 500
GRVGTGYSQA VMKTLLPALK AAASDASPFA GKGAPRGGRD IHWLKPVLVA
510 520 530 540 550
EVTHGGYTES GSLRQAAFKG LRADKPAAEV TERPQTPTPT GKAAPATDLH
560 570 580 590 600
VPGEPAPLAS ARGKVVVAGV TISNPDKILW PARDGHPAIT KAELARYYEA
610 620 630 640 650
AADRILPHVA DRPTSIIRAP EGVGGETFFQ RHAMPGSNPR LKLIDVHERK
660 670 680 690 700
PYVAVVDVGG LVAIGQSGGL ELHPWGCAPG EPEIPDQVTF DLDPDEGLDF
710 720 730 740 750
EDVISAARVV RKKLEALGLH PFVKTTGGKG LHVVVPIKTD ARSRVTWDQN
760 770 780 790 800
KAFAKGVSEA IRAEAPDRFT TTLAKKARGG KIFLDYLRNG RMATAVAPWS
810 820 830 840 850
PRARPGAGIA FPLAWTQVKA GLDPTAFSLR TYPALLKKPD PWKDFRVSAV

SLKGALKKL
Length:859
Mass (Da):92,688
Last modified:October 5, 2010 - v1
Checksum:i730D210221BE2DEB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002102 Genomic DNA. Translation: ADK99835.1.
RefSeqiWP_013267939.1. NC_014375.1.
YP_003817459.1. NC_014375.1.

Genome annotation databases

EnsemblBacteriaiADK99835; ADK99835; Bresu_0521.
KEGGibsb:Bresu_0521.
PATRICi42200176. VBIBreSub37974_0528.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002102 Genomic DNA. Translation: ADK99835.1.
RefSeqiWP_013267939.1. NC_014375.1.
YP_003817459.1. NC_014375.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi633149.Bresu_0521.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADK99835; ADK99835; Bresu_0521.
KEGGibsb:Bresu_0521.
PATRICi42200176. VBIBreSub37974_0528.

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiLELHPWN.

Enzyme and pathway databases

BioCyciBSUB633149:GHJJ-524-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81Imported.

Entry informationi

Entry nameiD9QKL0_BRESC
AccessioniPrimary (citable) accession number: D9QKL0
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: June 24, 2015
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.