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D9QKL0

- D9QKL0_BRESC

UniProt

D9QKL0 - D9QKL0_BRESC

Protein
Submitted name:

DNA ligase D

Gene

Bresu_0521

Organism
Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) (Caulobacter subvibrioides)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 22 (01 Oct 2014)
      Sequence version 1 (05 Oct 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciBSUB633149:GHJJ-524-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:Bresu_0521Imported
    OrganismiBrevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) (Caulobacter subvibrioides)Imported
    Taxonomic identifieri633149 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaCaulobacteralesCaulobacteraceaeBrevundimonas
    ProteomesiUP000002696: Chromosome

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiRTETWAK.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D9QKL0-1 [UniParc]FASTAAdd to Basket

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    MKGELKTYQA KRRFAETPEP KGTKATRKGA APLRYLIQRH AATRLHYDFR    50
    IEFDGVLKSW AVTKAPSRDT TVKRLAVEVE DHPLDYGSFE GTIPDGNYGA 100
    GTVQLWDTGT WSPRHPETLE ADWAKGSIKM DLDGERLKGG WALVRLKSDR 150
    GKPSKWANWL LLKEKDAHAV PGEGDALAEI DASITTGRSL AEIAAGKTPG 200
    TPTRPTGRKA AARPKAAPSG ATLSKPPAFT PIQLCKVADH PPSGAGWAHE 250
    IKFDGYRVQI ATGGGKARLY TRSGLDWSQK FPEVVADAAR WPDGVIDGEL 300
    CALDPDHMPD FPALQAAISA GRTADLVFFA FDLLSEGTED LREKPLSHRK 350
    ARLSGHIDRM SRAARDRIRY VDHFASTGQA VLESACRMDL EGVISKKLDA 400
    PYTAGRSSTW LKSKCRGGDE VVIGGWSSEN GTRFRSLLVG VREGEGLRYL 450
    GRVGTGYSQA VMKTLLPALK AAASDASPFA GKGAPRGGRD IHWLKPVLVA 500
    EVTHGGYTES GSLRQAAFKG LRADKPAAEV TERPQTPTPT GKAAPATDLH 550
    VPGEPAPLAS ARGKVVVAGV TISNPDKILW PARDGHPAIT KAELARYYEA 600
    AADRILPHVA DRPTSIIRAP EGVGGETFFQ RHAMPGSNPR LKLIDVHERK 650
    PYVAVVDVGG LVAIGQSGGL ELHPWGCAPG EPEIPDQVTF DLDPDEGLDF 700
    EDVISAARVV RKKLEALGLH PFVKTTGGKG LHVVVPIKTD ARSRVTWDQN 750
    KAFAKGVSEA IRAEAPDRFT TTLAKKARGG KIFLDYLRNG RMATAVAPWS 800
    PRARPGAGIA FPLAWTQVKA GLDPTAFSLR TYPALLKKPD PWKDFRVSAV 850
    SLKGALKKL 859
    Length:859
    Mass (Da):92,688
    Last modified:October 5, 2010 - v1
    Checksum:i730D210221BE2DEB
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002102 Genomic DNA. Translation: ADK99835.1.
    RefSeqiYP_003817459.1. NC_014375.1.

    Genome annotation databases

    EnsemblBacteriaiADK99835; ADK99835; Bresu_0521.
    GeneIDi9502367.
    KEGGibsb:Bresu_0521.
    PATRICi42200176. VBIBreSub37974_0528.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002102 Genomic DNA. Translation: ADK99835.1 .
    RefSeqi YP_003817459.1. NC_014375.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADK99835 ; ADK99835 ; Bresu_0521 .
    GeneIDi 9502367.
    KEGGi bsb:Bresu_0521.
    PATRICi 42200176. VBIBreSub37974_0528.

    Phylogenomic databases

    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi RTETWAK.

    Enzyme and pathway databases

    BioCyci BSUB633149:GHJJ-524-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81Imported.

    Entry informationi

    Entry nameiD9QKL0_BRESC
    AccessioniPrimary (citable) accession number: D9QKL0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 5, 2010
    Last sequence update: October 5, 2010
    Last modified: October 1, 2014
    This is version 22 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3