Beta-galactosidase - Acidilobus saccharovorans (strain DSM 16705 / VKM B-2471 / 345-15)

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D9PZ08 (D9PZ08_ACIS3) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 19. History...

Clusters with 100%, 90%, 50% identity |

Third-party data

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Names·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

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Names·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Submitted name:
Beta-galactosidase EMBL ADL19795.1
EC=3.2.1.23 EMBL ADL19795.1

Gene names

Ordered Locus Names:

ASAC_1390 EMBL ADL19795.1

Organism

Acidilobus saccharovorans (strain DSM 16705 / VKM B-2471 / 345-15) [Complete proteome] [HAMAP] EMBL ADL19795.1

Taxonomic identifier

Taxonomic lineage

Archaea › Crenarchaeota › Thermoprotei › Acidilobales › Acidilobaceae › Acidilobus ›

Protein attributes

Sequence length	490 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 1 family. RuleBase RU003690

Ontologies

Keywords
Molecular function	Glycosidase RuleBase RU004468 EMBL ADL19795.1 Hydrolase
Technical term	3D-structure PDB 4HA3 PDB 4HA4 Complete proteome
Gene Ontology (GO)
Biological_process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	beta-galactosidase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

D9PZ08 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: D4C5669C67F3C944
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490

55,522

        10         20         30         40         50         60 
MAVTFPKDFL FGWSQAGFQS EMGTPGSEDP NSDWYAWVHD RENIAAGLVS GDFPENGPGY 

        70         80         90        100        110        120 
WGNYRKFHDA AQAMGLTAAR IGVEWSRIFP RPTFDVKVDA EVKGDDVLSV YVSEGALEQL 

       130        140        150        160        170        180 
DKMANRDAIN HYREMFSDLR SRGITFILNL YHWPLPLWLH DPIAIRRGNL SAPSGWLDVR 

       190        200        210        220        230        240 
TVIEFAKFSA YVAWKLDDLV YMYSTMNEPN VVWGLGYAAV KSGFPPGYLC LECAGRAMKN 

       250        260        270        280        290        300 
LVQAHARAYD AVKAITKKPV GVIYANSDFT PLTDADREAA ERAKFDNRWA FFDAVVRGQL 

       310        320        330        340        350        360 
GGSTRDDLKG RLDWIGVNYY TRQVVRARGS GYEIVPGYGH GCEPNGVSPA GRPCSDFGWE 

       370        380        390        400        410        420 
FYPEGLYNVL KEYWDRYHLP LLVTENGIAD EGDYQRPYYL VSHVYQVHRA LQDGVNVIGY 

       430        440        450        460        470        480 
LHWSLADNYE WASGFSKRFG LLMVDYSTKR LHWRPSAFIY REIAKSRAIT DEIEHLNSVP 

       490 
PLRGLSPGHR

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The genome sequence of the crenarchaeon Acidilobus saccharovorans supports a new order, Acidilobales, and suggests an important ecological role in terrestrial acidic hot springs." Mardanov A.V., Svetlitchnyi V.A., Beletsky A.V., Prokofeva M.I., Bonch-Osmolovskaya E.A., Ravin N.V., Skryabin K.G. Appl. Environ. Microbiol. 76:5652-5657(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 16705 / VKM B-2471 / 345-15.
[2]	"Structure of beta-glycosidase from Acidilobus saccharovorans in complex with glycerol." Trofimov A.A., Polyakov K.M., Tikhonov A.V., Bezsudnova E.Y., Dorovatovskii P.V., Gumerov V.M., Ravin N.V., Skryabin K.G., Popov V.O. Submitted (SEP-2012) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.37 ANGSTROMS) OF 2-490.
[3]	"Structures of beta-glycosidase from Acidilobus saccharovorans in complexes with Tris and glycerol." Trofimov A.A., Polyakov K.M., Tikhonov A.V., Bezsudnova E.Y., Dorovatovskii P.V., Gumerov V.M., Ravin N.V., Skryabin K.G., Popov V.O. Submitted (SEP-2012) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.46 ANGSTROMS) OF 2-490.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

CP001742 Genomic DNA. Translation: ADL19795.1.

RefSeq

YP_003816826.1. NC_014374.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
4HA3	X-ray	1.46	A	2-490	[»]
4HA4	X-ray	1.37	A	2-490	[»]

ProteinModelPortal

ModBase

Protocols and materials databases

StructuralBiologyKnowledgebase

Genome annotation databases

EnsemblBacteria

ADL19795; ADL19795; ASAC_1390.

GeneID

KEGG

Organism-specific databases

CMR

Phylogenomic databases

HOGENOM

OMA

Enzyme and pathway databases

BioCyc

ASAC666510:GH9G-1436-MONOMER.

Family and domain databases

Gene3D

3.20.20.80. 1 hit.

InterPro

IPR001360. Glyco_hydro_1.
IPR018120. Glyco_hydro_1_AS.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]

PANTHER

PTHR10353. PTHR10353. 1 hit.

Pfam

PF00232. Glyco_hydro_1. 2 hits.
[Graphical view]

PRINTS

PR00131. GLHYDRLASE1.

SUPFAM

SSF51445. Glyco_hydro_cat. 1 hit.

PROSITE

PS00572. GLYCOSYL_HYDROL_F1_1. 1 hit.
PS00653. GLYCOSYL_HYDROL_F1_2. 1 hit.
[Graphical view]

ProtoNet

Entry information

Entry name

D9PZ08_ACIS3

Accession

Primary (citable) accession number: D9PZ08

Entry history

Integrated into UniProtKB/TrEMBL:	October 5, 2010
Last sequence update:	October 5, 2010
Last modified:	May 1, 2013
This is version 19 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

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Names·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info