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D9PYF9 (D9PYF9_METTM) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length405 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Metal binding441Iron PDB 4CI0
Metal binding631Nickel PDB 4CI0
Metal binding661Nickel PDB 4CI0
Metal binding3471Iron; via carbonyl oxygen PDB 4CI0
Metal binding3801Nickel PDB 4CI0
Metal binding3831Nickel PDB 4CI0
Metal binding3861Iron; via tele nitrogen PDB 4CI0

Sequences

Sequence LengthMass (Da)Tools
D9PYF9 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: 1172C414E1ADFEBD

FASTA40544,811
        10         20         30         40         50         60 
MSERIVISPT SRQEGHAELV MEVDDEGIVT KGRYFSITPV RGLEKMVTGK APETAPVMVQ 

        70         80         90        100        110        120 
RICGVCPIPH TLASVEAIDD SLDIEVPKAG RLLRELTLAA HHVNSHAIHH FLIAPDFVPE 

       130        140        150        160        170        180 
NLMADAINSV SEIRKNAQYV VDMVAGEGIH PSDVRIGGMA DNITELARKR LYARLKQLKP 

       190        200        210        220        230        240 
KVNEHVELMI GLIEDKGLPE GLGVHNQPTL ASHQIYGDRT KFDLDRFTEI MPESWYDDPE 

       250        260        270        280        290        300 
IAKRACSTIP LYDGRNVEVG PRARMVEFQG FKERGVVAQH VARALEMKTA LSRAIEILDE 

       310        320        330        340        350        360 
LDTSAPVRAD FDERGTGKLG IGAIEAPRGL DVHMAKVENG KIQFYSALVP TTWNIPTMGP 

       370        380        390        400 
ATEGFHHEYG PHVIRAYDPC LSCATHVMVV DDEDKSVIKN EMVKI 

« Hide

References

« Hide 'large scale' references
[1]"The genome sequence of Methanothermobacter marburgensis."
Kaster A., Seedorf H., Goenrich M., Wiezer A., Liesegang H., Thauer R., Gottschalk G.
Submitted (AUG-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Marburg.
[2]"Complete genome sequence of Methanothermobacter marburgensis, a methanoarchaeon model organism."
Liesegang H., Kaster A.K., Wiezer A., Goenrich M., Wollherr A., Seedorf H., Gottschalk G., Thauer R.K.
J. Bacteriol. 192:5850-5851(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg.
[3]"De novo modeling of the F420-reducing [NiFe]-hydrogenase from a methanogenic archaeon by cryo-electron microscopy."
Mills D.J., Vitt S., Strauss M., Shima S., Vonck J.
Elife 2:e00218-e00218(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: STRUCTURE BY ELECTRON MICROSCOPY (4.00 ANGSTROMS).
[4]"Atomic model of the F420-reducing [NiFe] hydrogenase by electron cryo-microscopy using a direct electron detector."
Allegretti M., Mills D.J., McMullan G., Kuhlbrandt W., Vonck J.
Elife 3:e01963-e01963(2014) [PubMed] [Europe PMC] [Abstract]
Cited for: STRUCTURE BY ELECTRON MICROSCOPY (3.36 ANGSTROMS) OF 1-386 IN COMPLEX WITH IRON AND NICKEL.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001710 Genomic DNA. Translation: ADL59257.1.
RefSeqYP_003850570.1. NC_014408.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3ZFSelectron microscopy4.00A1-405[»]
4CI0electron microscopy3.36A1-386[»]
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADL59257; ADL59257; MTBMA_c16860.
GeneID9705397.
KEGGmmg:MTBMA_c16860.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000004885.
KOK00440.
OMAHSINIEN.

Enzyme and pathway databases

BioCycMMAR79929:GH5J-1692-MONOMER.

Family and domain databases

Gene3D1.10.645.10. 1 hit.
InterProIPR017682. Coenz_F420_hydrogenase_asu.
IPR001501. Ni-dep_hyd_lsu.
IPR018194. Ni-dep_hyd_lsu_Ni_BS.
IPR029014. NiFe_Hase-like.
[Graphical view]
PfamPF00374. NiFeSe_Hases. 3 hits.
[Graphical view]
SUPFAMSSF56762. SSF56762. 1 hit.
TIGRFAMsTIGR03295. frhA. 1 hit.
PROSITEPS00507. NI_HGENASE_L_1. 1 hit.
PS00508. NI_HGENASE_L_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD9PYF9_METTM
AccessionPrimary (citable) accession number: D9PYF9
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: June 11, 2014
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)