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D9PYF7 (D9PYF7_METTM) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 30. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length275 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Metal binding561Iron-sulfur (4Fe-4S) 1 PDB 4CI0
Metal binding561Iron-sulfur (4Fe-4S) 2 PDB 3ZFS
Metal binding571Iron-sulfur (4Fe-4S) 1 PDB 4CI0
Metal binding591Iron-sulfur (4Fe-4S) 2 PDB 3ZFS
Metal binding601Iron-sulfur (4Fe-4S) 1 PDB 4CI0
Metal binding1311Iron-sulfur (4Fe-4S) 1; via amide nitrogen PDB 4CI0
Metal binding1321Iron-sulfur (4Fe-4S) 1 PDB 4CI0
Metal binding1711Iron-sulfur (4Fe-4S) 1 PDB 4CI0
Metal binding2201Iron-sulfur (4Fe-4S) 4 PDB 4CI0
Metal binding2231Iron-sulfur (4Fe-4S) 4 PDB 4CI0
Metal binding2241Iron-sulfur (4Fe-4S) 4; via amide nitrogen PDB 4CI0
Metal binding2241Iron-sulfur (4Fe-4S) 5 PDB 3ZFS
Metal binding2251Iron-sulfur (4Fe-4S) 4 PDB 4CI0
Metal binding2261Iron-sulfur (4Fe-4S) 4 PDB 4CI0
Metal binding2301Iron-sulfur (4Fe-4S) 3 PDB 4CI0
Metal binding2321Iron-sulfur (4Fe-4S) 3 PDB 4CI0
Metal binding2351Iron-sulfur (4Fe-4S) 3 PDB 4CI0
Metal binding2491Iron-sulfur (4Fe-4S) 3 PDB 4CI0
Metal binding2511Iron-sulfur (4Fe-4S) 6 PDB 3ZFS
Metal binding2521Iron-sulfur (4Fe-4S) 3 PDB 4CI0
Metal binding2551Iron-sulfur (4Fe-4S) 3 PDB 4CI0
Metal binding2551Iron-sulfur (4Fe-4S) 6 PDB 3ZFS
Metal binding2591Iron-sulfur (4Fe-4S) 4 PDB 4CI0

Sequences

Sequence LengthMass (Da)Tools
D9PYF7 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: 858E41DFB402030A

FASTA27530,238
        10         20         30         40         50         60 
MSLIARIKRF LGLEAEAKRE EPEKEKSEPV GASKEEVEKV AEENAKPRIG YIHLSGCTGD 

        70         80         90        100        110        120 
AMSLTENYDI LAELLTNMVD IVYGQTLVDL WEMPEMDLAL VEGSVCLQDE HSLHELKELR 

       130        140        150        160        170        180 
EKAKLVCAFG SCAATGCFTR YSRGGQQAQP SHESFVPIAD LIDVDLALPG CPPSPEIIAK 

       190        200        210        220        230        240 
TVVALLNNDM DYLQPMLDLA GYTEACGCDL QTKVVNQGLC IGCGTCAMAC QTRALDMTNG 

       250        260        270 
RPELNSDRCI KCGICYVQCP RSWWPEEQIK KELGL 

« Hide

References

« Hide 'large scale' references
[1]"The genome sequence of Methanothermobacter marburgensis."
Kaster A., Seedorf H., Goenrich M., Wiezer A., Liesegang H., Thauer R., Gottschalk G.
Submitted (AUG-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Marburg.
[2]"Complete genome sequence of Methanothermobacter marburgensis, a methanoarchaeon model organism."
Liesegang H., Kaster A.K., Wiezer A., Goenrich M., Wollherr A., Seedorf H., Gottschalk G., Thauer R.K.
J. Bacteriol. 192:5850-5851(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg.
[3]"De novo modeling of the F420-reducing [NiFe]-hydrogenase from a methanogenic archaeon by cryo-electron microscopy."
Mills D.J., Vitt S., Strauss M., Shima S., Vonck J.
Elife 2:e00218-e00218(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: STRUCTURE BY ELECTRON MICROSCOPY (4.00 ANGSTROMS) IN COMPLEX WITH IRON-SULFUR (4FE-4S).
[4]"Atomic model of the F420-reducing [NiFe] hydrogenase by electron cryo-microscopy using a direct electron detector."
Allegretti M., Mills D.J., McMullan G., Kuhlbrandt W., Vonck J.
Elife 3:e01963-e01963(2014) [PubMed] [Europe PMC] [Abstract]
Cited for: STRUCTURE BY ELECTRON MICROSCOPY (3.36 ANGSTROMS) IN COMPLEX WITH IRON-SULFUR (4FE-4S).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001710 Genomic DNA. Translation: ADL59255.1.
RefSeqYP_003850568.1. NC_014408.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3ZFSelectron microscopy4.00B1-275[»]
4CI0electron microscopy3.36B1-275[»]
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADL59255; ADL59255; MTBMA_c16840.
GeneID9705395.
KEGGmmg:MTBMA_c16840.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000236993.
KOK00443.
OMACPPSPEI.

Enzyme and pathway databases

BioCycMMAR79929:GH5J-1690-MONOMER.

Family and domain databases

Gene3D3.40.50.700. 1 hit.
InterProIPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
IPR017681. Coenz_F420_hydrogenase_gsu.
IPR006137. NADH_UbQ_OxRdtase-like_20kDa.
[Graphical view]
PfamPF13237. Fer4_10. 1 hit.
PF01058. Oxidored_q6. 1 hit.
[Graphical view]
TIGRFAMsTIGR03294. FrhG. 1 hit.
PROSITEPS00198. 4FE4S_FER_1. 1 hit.
PS51379. 4FE4S_FER_2. 2 hits.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD9PYF7_METTM
AccessionPrimary (citable) accession number: D9PYF7
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: June 11, 2014
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)