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D9PYF6 (D9PYF6_METTM) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length281 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding25 – 306FAD PDB 3ZFS PDB 4CI0
Nucleotide binding73 – 775FAD PDB 4CI0
Nucleotide binding207 – 2104FAD PDB 4CI0

Sites

Metal binding1031Iron-sulfur (4Fe-4S) 1 PDB 4CI0
Metal binding1031Iron-sulfur (4Fe-4S) 2 PDB 3ZFS
Metal binding1041Iron-sulfur (4Fe-4S) 1 PDB 4CI0
Metal binding1041Iron-sulfur (4Fe-4S) 2 PDB 3ZFS
Metal binding1341Iron-sulfur (4Fe-4S) 1 PDB 4CI0
Metal binding1341Iron-sulfur (4Fe-4S) 2 PDB 3ZFS
Metal binding1921Iron-sulfur (4Fe-4S) 1 PDB 4CI0
Metal binding1951Iron-sulfur (4Fe-4S) 1 PDB 4CI0
Binding site481FAD; via amide nitrogen PDB 4CI0
Binding site1331FAD; via carbonyl oxygen PDB 4CI0
Binding site1981FAD PDB 4CI0

Sequences

Sequence LengthMass (Da)Tools
D9PYF6 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: 1E981B4ADF3B1A16

FASTA28130,744
        10         20         30         40         50         60 
MVLGTYKEIV SARSTDREIQ KLAQDGGIVT GLLAYALDEG IIEGAVVAGP GEEFWKPQPM 

        70         80         90        100        110        120 
VAMSSDELKA AAGTKYTFSP NVMMLKKAVR QYGIEKLGTV AIPCQTMGIR KMQTYPFGVR 

       130        140        150        160        170        180 
FLADKIKLLV GIYCMENFPY TSLQTFICEK LGVSMELVEK MDIGKGKFWV YTQDDVLTLP 

       190        200        210        220        230        240 
LKETHGYEQA GCKICKDYVA ELADVSTGSV GSPDGWSTVI TRTDAGDSIF KQAVEAGLFE 

       250        260        270        280 
TKPIEEVKPG LGLLEKLAAQ KKEKAEKNIA ARKEMGLPTP F 

« Hide

References

« Hide 'large scale' references
[1]"The genome sequence of Methanothermobacter marburgensis."
Kaster A., Seedorf H., Goenrich M., Wiezer A., Liesegang H., Thauer R., Gottschalk G.
Submitted (AUG-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Marburg.
[2]"Complete genome sequence of Methanothermobacter marburgensis, a methanoarchaeon model organism."
Liesegang H., Kaster A.K., Wiezer A., Goenrich M., Wollherr A., Seedorf H., Gottschalk G., Thauer R.K.
J. Bacteriol. 192:5850-5851(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg.
[3]"De novo modeling of the F420-reducing [NiFe]-hydrogenase from a methanogenic archaeon by cryo-electron microscopy."
Mills D.J., Vitt S., Strauss M., Shima S., Vonck J.
Elife 2:e00218-e00218(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: STRUCTURE BY ELECTRON MICROSCOPY (4.00 ANGSTROMS) IN COMPLEX WITH FAD AND IRON-SULFUR (4FE-4S).
[4]"Atomic model of the F420-reducing [NiFe] hydrogenase by electron cryo-microscopy using a direct electron detector."
Allegretti M., Mills D.J., McMullan G., Kuhlbrandt W., Vonck J.
Elife 3:e01963-e01963(2014) [PubMed] [Europe PMC] [Abstract]
Cited for: STRUCTURE BY ELECTRON MICROSCOPY (3.36 ANGSTROMS) IN COMPLEX WITH FAD AND IRON-SULFUR (4FE-4S).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001710 Genomic DNA. Translation: ADL59254.1.
RefSeqYP_003850567.1. NC_014408.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3ZFSelectron microscopy4.00C1-281[»]
4CI0electron microscopy3.36C1-281[»]
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADL59254; ADL59254; MTBMA_c16830.
GeneID9705394.
KEGGmmg:MTBMA_c16830.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000223731.
KOK00441.
OMAMENFPYN.

Enzyme and pathway databases

BioCycMMAR79929:GH5J-1689-MONOMER.

Family and domain databases

InterProIPR007516. Co_F420_Hydgase/DH_bsu_N.
IPR017679. Coenz_F420_hydrogenase_bsu.
IPR007525. FrhB_FdhB_C.
[Graphical view]
PfamPF04432. FrhB_FdhB_C. 1 hit.
PF04422. FrhB_FdhB_N. 1 hit.
[Graphical view]
TIGRFAMsTIGR03289. frhB. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD9PYF6_METTM
AccessionPrimary (citable) accession number: D9PYF6
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: June 11, 2014
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)