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Protein
Submitted name:

F420-reducing hydrogenase, subunit beta

Gene

frhB

Organism
Methanothermobacter marburgensis (strain ATCC BAA-927 / DSM 2133 / JCM 14651 / NBRC 100331 / OCM 82 / Marburg) (Methanobacterium thermoautotrophicum)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei48FAD; via amide nitrogenCombined sources1
Metal bindingi103Iron-sulfur (4Fe-4S) 1Combined sources1
Metal bindingi103Iron-sulfur (4Fe-4S) 2Combined sources1
Metal bindingi104Iron-sulfur (4Fe-4S) 1Combined sources1
Metal bindingi104Iron-sulfur (4Fe-4S) 2Combined sources1
Metal bindingi134Iron-sulfur (4Fe-4S) 1Combined sources1
Metal bindingi134Iron-sulfur (4Fe-4S) 2Combined sources1
Metal bindingi192Iron-sulfur (4Fe-4S) 1Combined sources1
Metal bindingi195Iron-sulfur (4Fe-4S) 1Combined sources1
Binding sitei198FADCombined sources1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi24 – 30FADCombined sources7
Nucleotide bindingi73 – 77FADCombined sources5
Nucleotide bindingi133 – 135FADCombined sources3
Nucleotide bindingi207 – 210FADCombined sources4

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseImported

Keywords - Ligandi

4Fe-4SCombined sources, FADCombined sources, Flavoprotein, Iron, Iron-sulfur, Metal-binding, Nucleotide-bindingCombined sources

Names & Taxonomyi

Protein namesi
Submitted name:
F420-reducing hydrogenase, subunit betaImported (EC:1.12.98.1Imported)
Gene namesi
Name:frhBImported
Ordered Locus Names:MTBMA_c16830Imported
OrganismiMethanothermobacter marburgensis (strain ATCC BAA-927 / DSM 2133 / JCM 14651 / NBRC 100331 / OCM 82 / Marburg) (Methanobacterium thermoautotrophicum)Imported
Taxonomic identifieri79929 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanobacteriaMethanobacterialesMethanobacteriaceaeMethanothermobacter
Proteomesi
  • UP000000345 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi79929.MTBMA_c16830.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3ZFSelectron microscopy4.00C1-281[»]
4CI0electron microscopy3.36C1-281[»]
4OMFX-ray1.71B1-281[»]
SMRiD9PYF6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini10 – 86FrhB_FdhB_NInterPro annotationAdd BLAST77
Domaini95 – 246FrhB_FdhB_CInterPro annotationAdd BLAST152

Phylogenomic databases

eggNOGiarCOG02651. Archaea.
COG1035. LUCA.
HOGENOMiHOG000223731.
KOiK00441.
OMAiREYGCEK.

Family and domain databases

InterProiIPR007516. Co_F420_Hydgase/DH_bsu_N.
IPR017679. Coenz_F420_hydrogenase_bsu.
IPR007525. FrhB_FdhB_C.
[Graphical view]
PfamiPF04432. FrhB_FdhB_C. 1 hit.
PF04422. FrhB_FdhB_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR03289. frhB. 1 hit.

Sequencei

Sequence statusi: Complete.

D9PYF6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVLGTYKEIV SARSTDREIQ KLAQDGGIVT GLLAYALDEG IIEGAVVAGP
60 70 80 90 100
GEEFWKPQPM VAMSSDELKA AAGTKYTFSP NVMMLKKAVR QYGIEKLGTV
110 120 130 140 150
AIPCQTMGIR KMQTYPFGVR FLADKIKLLV GIYCMENFPY TSLQTFICEK
160 170 180 190 200
LGVSMELVEK MDIGKGKFWV YTQDDVLTLP LKETHGYEQA GCKICKDYVA
210 220 230 240 250
ELADVSTGSV GSPDGWSTVI TRTDAGDSIF KQAVEAGLFE TKPIEEVKPG
260 270 280
LGLLEKLAAQ KKEKAEKNIA ARKEMGLPTP F
Length:281
Mass (Da):30,744
Last modified:October 5, 2010 - v1
Checksum:i1E981B4ADF3B1A16
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001710 Genomic DNA. Translation: ADL59254.1.
RefSeqiWP_013296464.1. NC_014408.1.

Genome annotation databases

EnsemblBacteriaiADL59254; ADL59254; MTBMA_c16830.
GeneIDi9705394.
KEGGimmg:MTBMA_c16830.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001710 Genomic DNA. Translation: ADL59254.1.
RefSeqiWP_013296464.1. NC_014408.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3ZFSelectron microscopy4.00C1-281[»]
4CI0electron microscopy3.36C1-281[»]
4OMFX-ray1.71B1-281[»]
SMRiD9PYF6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi79929.MTBMA_c16830.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADL59254; ADL59254; MTBMA_c16830.
GeneIDi9705394.
KEGGimmg:MTBMA_c16830.

Phylogenomic databases

eggNOGiarCOG02651. Archaea.
COG1035. LUCA.
HOGENOMiHOG000223731.
KOiK00441.
OMAiREYGCEK.

Family and domain databases

InterProiIPR007516. Co_F420_Hydgase/DH_bsu_N.
IPR017679. Coenz_F420_hydrogenase_bsu.
IPR007525. FrhB_FdhB_C.
[Graphical view]
PfamiPF04432. FrhB_FdhB_C. 1 hit.
PF04422. FrhB_FdhB_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR03289. frhB. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiD9PYF6_METTM
AccessioniPrimary (citable) accession number: D9PYF6
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: November 2, 2016
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.