Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

D8U8W1

- D8U8W1_VOLCA

UniProt

D8U8W1 - D8U8W1_VOLCA

Protein

DNA ligase

Gene

lig1

Organism
Volvox carteri (Green alga)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 18 (01 Oct 2014)
      Sequence version 1 (05 Oct 2010)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    Catalytic activityi

    ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: UniProtKB-KW
    3. DNA replication Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseUniRule annotationImported

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
    Gene namesi
    Name:lig1Imported
    ORF Names:VOLCADRAFT_83047Imported
    OrganismiVolvox carteri (Green alga)Imported
    Taxonomic identifieri3067 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeChlorophytaChlorophyceaeChlamydomonadalesVolvocaceaeVolvox
    ProteomesiUP000001058: Unassembled WGS sequence

    Structurei

    3D structure databases

    ProteinModelPortaliD8U8W1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Phylogenomic databases

    KOiK10747.

    Family and domain databases

    Gene3Di1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProiIPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D8U8W1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MEGVGTGAVA AATKYAEADI TKLITWKKGT PVPYSLLANT FEAIAGTSKR    50
    LEIVAHLVAA FRAVLDTNPP DLLPAVYLCV NRVAPSHTGI ELGIGEATLI 100
    KALCEATGKN EAGIKKAYEA SGDLGVVAVG ARSTQRTMFT PPPLTIANVL 150
    KGFRDIAQVA GSKSVDIKRG MIVKMLVAAK GNEPGYIIRS LQAKLRIGLA 200
    EQSVLVALAH AVHLHREGVK DKDGRLAEKL EAAAQVVKQA YSECPSYDVL 250
    IPALLEQGTA DLLSRCHFMP GVPVKPMLAK PTTGVGEVLE KFTDTEFTVE 300
    YKYDGERAQV HVMEGGKTVH IFSRNAENNT PKYPDIVARL RGLLKPHVQS 350
    IVFDSEAVAY DPEKKKILPF QVLSTRARKD VSVGEIKVQV VLFAFDCLYL 400
    NGESLLHKPL TERREALYGA LMEKEGQLQF ATAKTSRDVE ELESFLTESV 450
    EAGTEGLIVK TLADTYEPSK RSSHWLKLKK DYMEGVGDTF DVVPLGAFYG 500
    KGKRTGFFGA YLLGVYDPDT ETYQTISKLG TGFSEEQLQQ LADSMRPHII 550
    PQPRPYYKWS DALVPDVWFD AVAVWEVKAA DLSISPVHKA AVGLVDPSKG 600
    ISIRFPRLIR VREDKSPEDA TSAAQVAEMF RSQAVIKQQQ VGYGCLWV 648
    Length:648
    Mass (Da):70,805
    Last modified:October 5, 2010 - v1
    Checksum:i7FC1378FB1E76FA7
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    GL378369 Genomic DNA. Translation: EFJ43817.1.
    RefSeqiXP_002955063.1. XM_002955017.1.
    UniGeneiVca.8777.

    Genome annotation databases

    GeneIDi9622077.
    KEGGivcn:VOLCADRAFT_83047.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    GL378369 Genomic DNA. Translation: EFJ43817.1 .
    RefSeqi XP_002955063.1. XM_002955017.1.
    UniGenei Vca.8777.

    3D structure databases

    ProteinModelPortali D8U8W1.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 9622077.
    KEGGi vcn:VOLCADRAFT_83047.

    Phylogenomic databases

    KOi K10747.

    Family and domain databases

    Gene3Di 1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProi IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: f. Nagariensis / EveImported.

    Entry informationi

    Entry nameiD8U8W1_VOLCA
    AccessioniPrimary (citable) accession number: D8U8W1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 5, 2010
    Last sequence update: October 5, 2010
    Last modified: October 1, 2014
    This is version 18 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3