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D8U8W1

- D8U8W1_VOLCA

UniProt

D8U8W1 - D8U8W1_VOLCA

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Protein

DNA ligase

Gene

lig1

Organism
Volvox carteri (Green alga)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA biosynthetic process Source: InterPro
  2. DNA ligation involved in DNA repair Source: InterPro
  3. DNA recombination Source: UniProtKB-KW
  4. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotationImported

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
Name:lig1Imported
ORF Names:VOLCADRAFT_83047Imported
OrganismiVolvox carteri (Green alga)Imported
Taxonomic identifieri3067 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeChlorophytaChlorophyceaeChlamydomonadalesVolvocaceaeVolvox
ProteomesiUP000001058: Unassembled WGS sequence

Structurei

3D structure databases

ProteinModelPortaliD8U8W1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

InParanoidiD8U8W1.
KOiK10747.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D8U8W1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MEGVGTGAVA AATKYAEADI TKLITWKKGT PVPYSLLANT FEAIAGTSKR
60 70 80 90 100
LEIVAHLVAA FRAVLDTNPP DLLPAVYLCV NRVAPSHTGI ELGIGEATLI
110 120 130 140 150
KALCEATGKN EAGIKKAYEA SGDLGVVAVG ARSTQRTMFT PPPLTIANVL
160 170 180 190 200
KGFRDIAQVA GSKSVDIKRG MIVKMLVAAK GNEPGYIIRS LQAKLRIGLA
210 220 230 240 250
EQSVLVALAH AVHLHREGVK DKDGRLAEKL EAAAQVVKQA YSECPSYDVL
260 270 280 290 300
IPALLEQGTA DLLSRCHFMP GVPVKPMLAK PTTGVGEVLE KFTDTEFTVE
310 320 330 340 350
YKYDGERAQV HVMEGGKTVH IFSRNAENNT PKYPDIVARL RGLLKPHVQS
360 370 380 390 400
IVFDSEAVAY DPEKKKILPF QVLSTRARKD VSVGEIKVQV VLFAFDCLYL
410 420 430 440 450
NGESLLHKPL TERREALYGA LMEKEGQLQF ATAKTSRDVE ELESFLTESV
460 470 480 490 500
EAGTEGLIVK TLADTYEPSK RSSHWLKLKK DYMEGVGDTF DVVPLGAFYG
510 520 530 540 550
KGKRTGFFGA YLLGVYDPDT ETYQTISKLG TGFSEEQLQQ LADSMRPHII
560 570 580 590 600
PQPRPYYKWS DALVPDVWFD AVAVWEVKAA DLSISPVHKA AVGLVDPSKG
610 620 630 640
ISIRFPRLIR VREDKSPEDA TSAAQVAEMF RSQAVIKQQQ VGYGCLWV
Length:648
Mass (Da):70,805
Last modified:October 5, 2010 - v1
Checksum:i7FC1378FB1E76FA7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL378369 Genomic DNA. Translation: EFJ43817.1.
RefSeqiXP_002955063.1. XM_002955017.1.
UniGeneiVca.8777.

Genome annotation databases

GeneIDi9622077.
KEGGivcn:VOLCADRAFT_83047.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL378369 Genomic DNA. Translation: EFJ43817.1 .
RefSeqi XP_002955063.1. XM_002955017.1.
UniGenei Vca.8777.

3D structure databases

ProteinModelPortali D8U8W1.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 9622077.
KEGGi vcn:VOLCADRAFT_83047.

Phylogenomic databases

InParanoidi D8U8W1.
KOi K10747.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProi IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: f. Nagariensis / EveImported.

Entry informationi

Entry nameiD8U8W1_VOLCA
AccessioniPrimary (citable) accession number: D8U8W1
Entry historyi
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: October 29, 2014
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3