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Protein

DNA ligase

Gene

lig1

Organism
Volvox carteri f. nagariensis
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n)-3'-hydroxyl + 5'-phospho-(deoxyribonucleotide)(m) = (deoxyribonucleotide)(n+m) + AMP + diphosphate.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLigaseUniRule annotationImported
Biological processDNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation
LigandATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
Name:lig1Imported
ORF Names:VOLCADRAFT_83047Imported
OrganismiVolvox carteri f. nagariensisImported
Taxonomic identifieri3068 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeChlorophytaChlorophyceaeChlamydomonadalesVolvocaceaeVolvox
Proteomesi
  • UP000001058 Componenti: Unassembled WGS sequence

Structurei

3D structure databases

ProteinModelPortaliD8U8W1
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini383 – 517DNA_LIGASE_A3InterPro annotationAdd BLAST135

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

InParanoidiD8U8W1
KOiK10747
OMAiWIKYKRD

Family and domain databases

Gene3Di1.10.3260.10, 1 hit
InterProiView protein in InterPro
IPR000977 DNA_ligase_ATP-dep
IPR012309 DNA_ligase_ATP-dep_C
IPR012310 DNA_ligase_ATP-dep_cent
IPR016059 DNA_ligase_ATP-dep_CS
IPR012308 DNA_ligase_ATP-dep_N
IPR036599 DNA_ligase_N_sf
IPR012340 NA-bd_OB-fold
PfamiView protein in Pfam
PF04679 DNA_ligase_A_C, 1 hit
PF01068 DNA_ligase_A_M, 1 hit
PF04675 DNA_ligase_A_N, 1 hit
SUPFAMiSSF117018 SSF117018, 1 hit
SSF50249 SSF50249, 1 hit
TIGRFAMsiTIGR00574 dnl1, 1 hit
PROSITEiView protein in PROSITE
PS00697 DNA_LIGASE_A1, 1 hit
PS00333 DNA_LIGASE_A2, 1 hit
PS50160 DNA_LIGASE_A3, 1 hit

Sequencei

Sequence statusi: Complete.

D8U8W1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEGVGTGAVA AATKYAEADI TKLITWKKGT PVPYSLLANT FEAIAGTSKR
60 70 80 90 100
LEIVAHLVAA FRAVLDTNPP DLLPAVYLCV NRVAPSHTGI ELGIGEATLI
110 120 130 140 150
KALCEATGKN EAGIKKAYEA SGDLGVVAVG ARSTQRTMFT PPPLTIANVL
160 170 180 190 200
KGFRDIAQVA GSKSVDIKRG MIVKMLVAAK GNEPGYIIRS LQAKLRIGLA
210 220 230 240 250
EQSVLVALAH AVHLHREGVK DKDGRLAEKL EAAAQVVKQA YSECPSYDVL
260 270 280 290 300
IPALLEQGTA DLLSRCHFMP GVPVKPMLAK PTTGVGEVLE KFTDTEFTVE
310 320 330 340 350
YKYDGERAQV HVMEGGKTVH IFSRNAENNT PKYPDIVARL RGLLKPHVQS
360 370 380 390 400
IVFDSEAVAY DPEKKKILPF QVLSTRARKD VSVGEIKVQV VLFAFDCLYL
410 420 430 440 450
NGESLLHKPL TERREALYGA LMEKEGQLQF ATAKTSRDVE ELESFLTESV
460 470 480 490 500
EAGTEGLIVK TLADTYEPSK RSSHWLKLKK DYMEGVGDTF DVVPLGAFYG
510 520 530 540 550
KGKRTGFFGA YLLGVYDPDT ETYQTISKLG TGFSEEQLQQ LADSMRPHII
560 570 580 590 600
PQPRPYYKWS DALVPDVWFD AVAVWEVKAA DLSISPVHKA AVGLVDPSKG
610 620 630 640
ISIRFPRLIR VREDKSPEDA TSAAQVAEMF RSQAVIKQQQ VGYGCLWV
Length:648
Mass (Da):70,805
Last modified:October 5, 2010 - v1
Checksum:i7FC1378FB1E76FA7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL378369 Genomic DNA Translation: EFJ43817.1
RefSeqiXP_002955063.1, XM_002955017.1
UniGeneiVca.8777

Genome annotation databases

GeneIDi9622077
KEGGivcn:VOLCADRAFT_83047

Similar proteinsi

Entry informationi

Entry nameiD8U8W1_VOLCA
AccessioniPrimary (citable) accession number: D8U8W1
Entry historyiIntegrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: March 28, 2018
This is version 28 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health