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D8U8W1 (D8U8W1_VOLCA) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 17. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
DNA ligase RuleBase RU000617

EC=6.5.1.1 RuleBase RU000617
Gene names
Name:lig1 EMBL EFJ43817.1
ORF Names:VOLCADRAFT_83047 EMBL EFJ43817.1
OrganismVolvox carteri (Green alga) [Complete proteome]
Taxonomic identifier3067 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeChlorophytaChlorophyceaeChlamydomonadalesVolvocaceaeVolvox

Protein attributes

Sequence length648 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617

Sequence similarities

Belongs to the ATP-dependent DNA ligase family.

Sequences

Sequence LengthMass (Da)Tools
D8U8W1 [UniParc].

Last modified October 5, 2010. Version 1.
Checksum: 7FC1378FB1E76FA7

FASTA64870,805
        10         20         30         40         50         60 
MEGVGTGAVA AATKYAEADI TKLITWKKGT PVPYSLLANT FEAIAGTSKR LEIVAHLVAA 

        70         80         90        100        110        120 
FRAVLDTNPP DLLPAVYLCV NRVAPSHTGI ELGIGEATLI KALCEATGKN EAGIKKAYEA 

       130        140        150        160        170        180 
SGDLGVVAVG ARSTQRTMFT PPPLTIANVL KGFRDIAQVA GSKSVDIKRG MIVKMLVAAK 

       190        200        210        220        230        240 
GNEPGYIIRS LQAKLRIGLA EQSVLVALAH AVHLHREGVK DKDGRLAEKL EAAAQVVKQA 

       250        260        270        280        290        300 
YSECPSYDVL IPALLEQGTA DLLSRCHFMP GVPVKPMLAK PTTGVGEVLE KFTDTEFTVE 

       310        320        330        340        350        360 
YKYDGERAQV HVMEGGKTVH IFSRNAENNT PKYPDIVARL RGLLKPHVQS IVFDSEAVAY 

       370        380        390        400        410        420 
DPEKKKILPF QVLSTRARKD VSVGEIKVQV VLFAFDCLYL NGESLLHKPL TERREALYGA 

       430        440        450        460        470        480 
LMEKEGQLQF ATAKTSRDVE ELESFLTESV EAGTEGLIVK TLADTYEPSK RSSHWLKLKK 

       490        500        510        520        530        540 
DYMEGVGDTF DVVPLGAFYG KGKRTGFFGA YLLGVYDPDT ETYQTISKLG TGFSEEQLQQ 

       550        560        570        580        590        600 
LADSMRPHII PQPRPYYKWS DALVPDVWFD AVAVWEVKAA DLSISPVHKA AVGLVDPSKG 

       610        620        630        640 
ISIRFPRLIR VREDKSPEDA TSAAQVAEMF RSQAVIKQQQ VGYGCLWV 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
GL378369 Genomic DNA. Translation: EFJ43817.1.
RefSeqXP_002955063.1. XM_002955017.1.
UniGeneVca.8777.

3D structure databases

ProteinModelPortalD8U8W1.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID9622077.
KEGGvcn:VOLCADRAFT_83047.

Phylogenomic databases

KOK10747.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD8U8W1_VOLCA
AccessionPrimary (citable) accession number: D8U8W1
Entry history
Integrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: October 16, 2013
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)